Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9880g00002 ATGGAGCTTCTTGTTCTGAACACATTGAAGTGGAGAATGCAGGCGATTACCCCATTTTCCTTCATTGACTATTTCCTTCAGAAGATCAATGATGATGAAGCTTCAATTGGAGCTTCAATTTTGCAATCCTCCGAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCATAGAGTTCAGACCCTCAGAGATTGCAGCAGCAGTGGCAATATCTGTGGTGGGGGACGGCCAAACAGTTCAAACAGAGAAAGCAAGTTCTGATCTGATTCAGCCTGTAGAAAAGGAGAGGGTGTTGAAGTGTGTTAAAATGATCCAAGCTCTGTCATCAAACGATGGTTCTGCTAAGGATTTAATTCCTTCTGTTTCTGTCGCTAGCGTGCCTGAAAGCCCAATAAGGGTGTTGAACAATGCATGTTTCAGCTACAAAAGTGATGAACCAAATGCTGCTCTTTGTGCAAATTCTTCACATACTGATACTCCAGATGCTAAAAGGAGGAAGCTAGACAAAACCTTTGGAGAATAG 522 0.4215 MELLVLNTLKWRMQAITPFSFIDYFLQKINDDEASIGASILQSSELILSTVRGIDFIEFRPSEIAAAVAISVVGDGQTVQTEKASSDLIQPVEKERVLKCVKMIQALSSNDGSAKDLIPSVSVASVPESPIRVLNNACFSYKSDEPNAALCANSSHTDTPDAKRRKLDKTFGE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9880g00002 173 CDD CYCLIN_AtCycD-like_rpt2 16 104 - -
Vium9880g00002 173 MobiDBLite consensus disorder prediction 158 173 - -
Vium9880g00002 173 Gene3D - 1 116 - -
Vium9880g00002 173 SMART Cyclin_C_2 16 129 IPR004367 -
Vium9880g00002 173 MobiDBLite consensus disorder prediction 152 173 - -
Vium9880g00002 173 FunFam D6-type cyclin 5 102 - -
Vium9880g00002 173 PANTHER CYCLINS 1 111 IPR039361 -
Vium9880g00002 173 SUPERFAMILY Cyclin-like 1 107 IPR036915 -
Vium9880g00002 173 Pfam Cyclin, C-terminal domain 16 114 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9880g00002 Vium-Chr9880 29948 31289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9880g00002 1 151 Core Cell Cycle Gene Families AT2G22490 44.586 3.49e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9880g00002 K18810 - vum:124848998 317.775