Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium987g00002 ATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACACTTGGTGAAAGAAGTACCACTCATCATGATCGTGATCAACCTCATCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCCTCTTGCACCTCGTCAACCTCATACACTCACACCAGATCCAGATCTAACCACCCCAATTGCTCCCACATCGAATCCTCTAAGAACACCACACCCCCACATAACAACAATACCACAACCACCAGCAGCAGCAACAACCTCAACCTCAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCTGGAATCACTAAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGAGAGTTACAGCCACAACAACCACCGCCACTGTTACTGGTACAGCAACAACAACAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGGCACCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATCACAGATTAGTTGGTAGCAGTGGTACACCGAGTCTGGTTCCCCAAGTGATGATGGCCTTTGGAGGCCAAGCTGAGTCCTCAAGCGAAGATCTGAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAGCAGGAGGTACAGCAATTTTGTTCTCAAGCGGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1041 0.4841 MEMGGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTLGERSTTHHDRDQPHHQPPHQTHTLIFNDPPHHNLYPPPPPPPLAPRQPHTLTPDPDLTTPIAPTSNPLRTPHPHITTIPQPPAAATTSTSTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTLESLRCAACECHRNFHRKEVDGELQPQQPPPLLLVQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLHHHRLVGSSGTPSLVPQVMMAFGGQAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM 346
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium987g00002 346 MobiDBLite consensus disorder prediction 89 110 - -
Vium987g00002 346 MobiDBLite consensus disorder prediction 68 86 - -
Vium987g00002 346 NCBIfam homeobox domain, ZF-HD class 286 343 IPR006455 -
Vium987g00002 346 SUPERFAMILY Homeodomain-like 275 342 IPR009057 -
Vium987g00002 346 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Vium987g00002 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Vium987g00002 346 MobiDBLite consensus disorder prediction 117 131 - -
Vium987g00002 346 FunFam Zinc-finger homeodomain protein 2 274 346 - -
Vium987g00002 346 MobiDBLite consensus disorder prediction 18 39 - -
Vium987g00002 346 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Vium987g00002 346 Gene3D - 274 345 - -
Vium987g00002 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 117 343 - -
Vium987g00002 346 MobiDBLite consensus disorder prediction 40 54 - -
Vium987g00002 346 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium987g00002 Vium-Chr987 21071 23346 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium987g00002 68 343 ZF-HD Transcription Factor Family AT2G18350 42.857 1.62e-64 203
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium987g00002 ZF-HD_dimer 5.1e-30 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium987g00002 - - vra:106776405 526.168