Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium987g00002 | ATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACACTTGGTGAAAGAAGTACCACTCATCATGATCGTGATCAACCTCATCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCCTCTTGCACCTCGTCAACCTCATACACTCACACCAGATCCAGATCTAACCACCCCAATTGCTCCCACATCGAATCCTCTAAGAACACCACACCCCCACATAACAACAATACCACAACCACCAGCAGCAGCAACAACCTCAACCTCAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCTGGAATCACTAAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGAGAGTTACAGCCACAACAACCACCGCCACTGTTACTGGTACAGCAACAACAACAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGGCACCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATCACAGATTAGTTGGTAGCAGTGGTACACCGAGTCTGGTTCCCCAAGTGATGATGGCCTTTGGAGGCCAAGCTGAGTCCTCAAGCGAAGATCTGAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAGCAGGAGGTACAGCAATTTTGTTCTCAAGCGGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA | 1041 | 0.4841 | MEMGGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTLGERSTTHHDRDQPHHQPPHQTHTLIFNDPPHHNLYPPPPPPPLAPRQPHTLTPDPDLTTPIAPTSNPLRTPHPHITTIPQPPAAATTSTSTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTLESLRCAACECHRNFHRKEVDGELQPQQPPPLLLVQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLHHHRLVGSSGTPSLVPQVMMAFGGQAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM | 346 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 68 | 86 | - | - | |
Vium987g00002 | 346 | NCBIfam | homeobox domain, ZF-HD class | 286 | 343 | IPR006455 | - | |
Vium987g00002 | 346 | SUPERFAMILY | Homeodomain-like | 275 | 342 | IPR009057 | - | |
Vium987g00002 | 346 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 134 | 185 | IPR006456 | - | |
Vium987g00002 | 346 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 135 | 184 | IPR006456 | - | |
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 117 | 131 | - | - | |
Vium987g00002 | 346 | FunFam | Zinc-finger homeodomain protein 2 | 274 | 346 | - | - | |
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 18 | 39 | - | - | |
Vium987g00002 | 346 | Pfam | ZF-HD protein dimerisation region | 133 | 185 | IPR006456 | - | |
Vium987g00002 | 346 | Gene3D | - | 274 | 345 | - | - | |
Vium987g00002 | 346 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 117 | 343 | - | - | |
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Vium987g00002 | 346 | MobiDBLite | consensus disorder prediction | 1 | 131 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium987g00002 | Vium-Chr987 | 21071 | 23346 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium987g00002 | 68 | 343 | ZF-HD Transcription Factor Family | AT2G18350 | 42.857 | 1.62e-64 | 203 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Vium987g00002 | ZF-HD_dimer | 5.1e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium987g00002 | - | - | vra:106776405 | 526.168 |