Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9875g00001 ATGGGTTCGCAGCCAGATATTAATGCCAAGATGAGATCAATCCTTGTGGACTGGTTGATAGAAGTCCATAGAAAATTTGAGCTCATGCCAGAAACTCTCTACTTGACCCTCAACATTGTTGATCGGTTCCTGTCCATGAAGGCCGTGCCTAGAAGGGAACTTCAGCTTGTTGGCATCAGCTCCATGCTGCTAGCCTCAAAATATGAAGAGATATGGGCACCAGAGGTTAATGACTTTGTGTGCATATCAGACAATGCTTATGTCAGTGAACAAGTGCTGTTGATGGAGAAAACAATCCTTAGGAAGCTTGAGTGGTACTTAACGGTTCCCACACCGTATGTCTTCTTGGTTCGGTATATCAAAGCCTCAACTCCATCTGATAAAGAGACGGAATATATGGTGTTTTTCCTTGCTGAACTTGCTATGATGCACTATCCTACCGTAGTCTTGCACTGCCCTTCTTTGATTGCTGCTTCTGCTGTGCTTGTGGCTCGAAGTACTCTTCAAAGGACTCCTTTCTGGACAAGCACTTTGAAGCATTACACAGGCTACTCTGAGGAGCAACTGAGGGATTGCGCCAAAATCCTGGTCAACCTTCATGCCACTGCTCCAGAAAGTAAGCTCAGGGCAGTTTACAAGAAATACAGTAGCTCAGATTGCTCCTCTGTTGCTCTTCGTCCTCCAGCAAAGAACTTGACCGAACTGTCTTAA 711 0.4529 MGSQPDINAKMRSILVDWLIEVHRKFELMPETLYLTLNIVDRFLSMKAVPRRELQLVGISSMLLASKYEEIWAPEVNDFVCISDNAYVSEQVLLMEKTILRKLEWYLTVPTPYVFLVRYIKASTPSDKETEYMVFFLAELAMMHYPTVVLHCPSLIAASAVLVARSTLQRTPFWTSTLKHYTGYSEEQLRDCAKILVNLHATAPESKLRAVYKKYSSSDCSSVALRPPAKNLTELS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9875g00001 236 Gene3D - 1 101 - -
Vium9875g00001 236 SMART cyclin_7 17 101 IPR013763 -
Vium9875g00001 236 SMART cyclin_7 114 198 IPR013763 -
Vium9875g00001 236 PANTHER CYCLINS 2 217 IPR039361 -
Vium9875g00001 236 Gene3D - 102 235 - -
Vium9875g00001 236 SMART Cyclin_C_2 110 229 IPR004367 -
Vium9875g00001 236 SUPERFAMILY Cyclin-like 109 231 IPR036915 -
Vium9875g00001 236 FunFam G2/mitotic-specific cyclin-1 98 224 - -
Vium9875g00001 236 Pfam Cyclin, C-terminal domain 110 226 IPR004367 -
Vium9875g00001 236 Pfam Cyclin, N-terminal domain 2 107 IPR006671 -
Vium9875g00001 236 PIRSF Cyclin_A_B_D_E 1 236 IPR046965 GO:0016538|GO:0044772
Vium9875g00001 236 ProSitePatterns Cyclins signature. 12 43 IPR006671 -
Vium9875g00001 236 SUPERFAMILY Cyclin-like 3 107 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9875g00001 Vium-Chr9875 3716 5202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9875g00001 1 233 Core Cell Cycle Gene Families AT2G26760 65.665 1.17e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9875g00001 K21777 - gmx:547782 407.142