Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9857g00005 ATGGATTATGATAATAAGCAATTATGTCAGAATGAAGGGTCTCTATCGGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAACAATCTTGTAGATGCAGGGGATGAGATATTAAAAACCAGCGATACTTTTTCAAGTTCAAGAAAAATTGGGATTCAAGATGGTCTAGATTGCCTACAACATGCCAGTGCACTGAAGCAAGGCTCTGATAATGGATCATCTAATTTAGAAGATTGTATTACTGTTCACGGCTCTGGTATCATAAATGATGCTCGAAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGAAAAACCATTCCCAAATTCTAATATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTTAATATTTTGAGTTCAGAGATGGAATCCTTATCTCCAGATCATGTGAATCCTGATAACCTTGCAAATAATGTGGACGGAGGTACAGTTCTATTGTCGAAAGATCCATCTGCTTCTAAAGTTTTAGATCAGTCTGTTCAAAACGATGTTGAGTCAATAACTGGTTTGGATGGGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCAGTTTTATGCTGCAAAAAACAACAATGGTGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTTACAGCTAACCCAAATTTAACTCAATGTCAATCTCAAATCAGTGCTGTTATTGTGGTTACCACCACATCTGATGTTGAAGCTCCTGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCGTTGTCAAGCATGGGTATGTGTGTACCGACTTCTGTTCAGTCAATGCTTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACTAAAATGTCTGACAATATTTTGAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCTGAATTACAACACTCAGATATAGTCTCTTTTTCACCATGTGAGGACTTAGCATTTCAAAACGATCAATTCTCACCATTGGAAGGTGAGTTCATAGGAAACATTACTCCAGTTGTGCTTGTGAGTAATACTCAAATTGATGTTTTAGGTGTTGGAAATACAATGGCAGAAAAGACTGATCTACAGGCCGTTAAGGAACATTATCAATATAGAGAATTTGTGCAAAGGTCACCAAGAGCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCTCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGATGAATTCACTGTGGATGCACCTGGTGCATTATCAGATATATTTTCTCAAGGGATGGCATCTGAAGTACCAGATAAAAGGATTTTAGAATTGACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATACTTCGTCAGTACATCAGACGAAACATAATAGTAGGTCAGATAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTTACAACTCATGCTCTAAATTCATATCGTTTTGGGTCGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCGGAGACAAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGACAGGTAATAATCCCCCTATTTCTTTACCTAGAATCAATTCAGTAAGAGCAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAATGGAAACAGTCTTGTAAGGAAACCTACTCCAGTTCCTGCTTTACCTCAAATTTCCTCTGTAAACAAGTCATCTTCGGGCTTGGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAAGATTTTCTCAGCAGAGGCAGAGACAGAGAACACCTCCACTACCAATTGACATCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTCATTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCCAGAAAATCAACATGTTCCATCTGATAATGGGGAGAGTCAAGTTGAAGCAAACGAAGGCAATCCCCTTTCTTTGAATATGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGCGTGATGTTTCTCTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAGTTGGTTAGGACTACATTTGAAAGCCATTCCAACCAGACTGCTGCAGTGCCTAATGGCACAGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGTCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAAGAATTCACGTCATAATCAAAAGGTTTTGCCTCAATTGTTTCGATGGAAAAGAGCAACATTTTCTTCAAGTTTCAATAGTAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACACGGGTTTTCACTTTGGAAATCCAGAGTTTTAGGTGTTGGTGGTTGTAGTTTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGTGGTTTGCATCAGTTCTCAGTCAAAGAGTAGGAAGCATTCTTTCCAAGAGTTGGTTGAATTTGCAGGAGAGCGAATATTTCGTATTGGTTCAGTTCGTTACAGAATGGATCCCACCAGGAGGACACTCCAGAGGATTTCAGTTGATGAATCCCAGTCCTCGGCATCTACCAGTTCAGGTTTGGCCTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGTAATTGTCCATATAGACATGTCAATGTGAACCCCAATGCATCGATTTGTGAAGGATTTCTCAGGGGATATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTGAAGGATCCAAATGCAAACTCCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAAACACACCAGAGGACGCTATTTTGGTTTTATTCCTGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGACATAAACAAAGTAGTGAAATTGAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTGTCAGTGAAGAAGTCGCAGACACGGATGATCTATCATTTGATCCAGCAGTGTTCTGTGATAATGATTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTCTACTGAAAACAAAGTTCACATCACAATCACCTAACTCACATATCCTCCACGCAACTGGCGGAGACTTCGGTCGTTTGTTAATGAGGTAA 4071 0.3943 MDYDNKQLCQNEGSLSVGNYSNVQSPLNNNLVDAGDEILKTSDTFSSSRKIGIQDGLDCLQHASALKQGSDNGSSNLEDCITVHGSGIINDARNQLAHGDVTMHPENCETEKPFPNSNILAGSGEGNTKKIKKRKARTQFNILSSEMESLSPDHVNPDNLANNVDGGTVLLSKDPSASKVLDQSVQNDVESITGLDGVTALHEEGEFLETQFYAAKNNNGDANEVSPSSKRKKVTANPNLTQCQSQISAVIVVTTTSDVEAPVNLNDNQEHQKEFALSSMGMCVPTSVQSMLSVQSMPYSESITKMSDNILSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCEDLAFQNDQFSPLEGEFIGNITPVVLVSNTQIDVLGVGNTMAEKTDLQAVKEHYQYREFVQRSPRADMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFTVDAPGALSDIFSQGMASEVPDKRILELTAINDENICGVEENTSSVHQTKHNSRSDSAFGHSNMITKKTISEPSQVSSKVTTHALNSYRFGSSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRTGNNPPISLPRINSVRAVPPKRPILERKGNFQNTSYVRNGNSLVRKPTPVPALPQISSVNKSSSGLGEISKSTKSESRADVTDQPMYLRAGARFSQQRQRQRTPPLPIDIKSEENTSSSLVEPHSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEIPENQHVPSDNGESQVEANEGNPLSLNMKRIVYIKPKTNQLVATSNSRDVSLSTDDNGQTAFSDGYYKRRKNQLVRTTFESHSNQTAAVPNGTANSDGQGTSNALCNTRFSKKRLHKAVRSSCKRSRASLVWTLCSKNSSENDKNSRHNQKVLPQLFRWKRATFSSSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNVVCISSQSKSRKHSFQELVEFAGERIFRIGSVRYRMDPTRRTLQRISVDESQSSASTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGTCTEGSKCKLHHPKKQSKGKKRKRSGDQKHTRGRYFGFIPADVSESGMMVAPNRHKQSSEIEEELSDYISLDVVSEEVADTDDLSFDPAVFCDNDSLDDLDELIKPVLLLKTKFTSQSPNSHILHATGGDFGRLLMR 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9857g00005 1356 Gene3D - 1128 1184 - -
Vium9857g00005 1356 ProSiteProfiles Zinc finger C3H1-type profile. 1157 1183 IPR000571 GO:0046872
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 623 715 - -
Vium9857g00005 1356 Gene3D - 1185 1247 - -
Vium9857g00005 1356 SMART c3hfinal6 1131 1155 IPR000571 GO:0046872
Vium9857g00005 1356 SMART c3hfinal6 1102 1130 IPR000571 GO:0046872
Vium9857g00005 1356 SMART c3hfinal6 1157 1182 IPR000571 GO:0046872
Vium9857g00005 1356 SMART c3hfinal6 1184 1210 IPR000571 GO:0046872
Vium9857g00005 1356 SMART c3hfinal6 1211 1233 IPR000571 GO:0046872
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 1230 1248 - -
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 822 841 - -
Vium9857g00005 1356 Coils Coil 967 987 - -
Vium9857g00005 1356 ProSiteProfiles Zinc finger C3H1-type profile. 1184 1211 IPR000571 GO:0046872
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 694 715 - -
Vium9857g00005 1356 ProSiteProfiles Zinc finger C3H1-type profile. 1102 1131 IPR000571 GO:0046872
Vium9857g00005 1356 PANTHER CCCH ZINGC FINGER 46 1330 - -
Vium9857g00005 1356 FunFam Zinc finger CCCH domain-containing protein 7 1185 1246 - -
Vium9857g00005 1356 FunFam zinc finger CCCH domain-containing protein 3 1132 1183 - -
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 570 594 - -
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 110 130 - -
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 637 656 - -
Vium9857g00005 1356 MobiDBLite consensus disorder prediction 1222 1251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9857g00005 Vium-Chr9857 26660 34349 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium9857g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9857g00005 - - vum:124848982 2644