Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9857g00004 ATGGATTCGGATTTGGGTTCTGGAGAGAAGAATAAAAGGGTTTCGGTCTCTGATGGCTATTATTCTGGTTTGCATCAGCCGTATAGAGTGTCTTCCGTTGTGGTTGTGGATTTAAATAGGTCGCCTTGCAAACGGAATGATAGTTCTGGTTTGGGGAAGGAGGTGAATGTGCGGAAGAGTGTTCAGGATAGTTCTTCTCGGTCTCGTACCAGGGAGGCTGATGATTCTCGTGGGCAAAATGCGGTGCCAAATTCAGTTAAAGCTGGCAATGTCTGTTCTGGTAAATCGACCATAACGGTTGTCAAGAAGAAGAAAATTGTTAAGAGATTGGTGAAGAAAGCTAGTGCAAATTCTAGGACATCTGTGCCAAATTCACTGCAAAAAAGGCTTCCTGGAACTGTGAAAGTCGAGAGTGCTGCACTGATTTCGTCAACGGCCTCTATTCCTGAGAAAATTCAAGCTAATTCAGATGACAAAAGCAACATATATGATGAAGGGCCAGACTGTTTACATTCTTTGCCAAAGGAAGGTAGTGTATTGAAAGAAGATAAAGAGGGAGGTTTACTTCAGCTGAGTTTGGGGCCAGATTACACATCGCAAGAGTGTTACAAAGATTCTGATAATAGGGAACTGTCCAGGTTTGAAATTGAAAGAGATGAAAACATTCCAAAATTTTCTTCTCGTGCTTCTAGTAGTGAAGATAAGAAGAGTGATTCAGATTGTTTAGATGTTAATAATGATGTCCTTGATAATGGAAATATTATTTTTATGCATGATAATGCAAATACTTCCGATTGTTTAGCTGCAAATAATTCTGTTCCAGGTACTATTGCTGAAGTCAATCACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGGGTCTCTATCGGTTGGGAATTATTCAAATGTACAATCCCCACTGAATAACAATCTTGTAGATGCAGGGGATGAGATATTAAAAACCAGCGATACTTTTTCAAGTTCAAGAAAAATTGGGATTCAAGATGGTCTAGATTGCCTACAACATGCCAGTGCACTGAAGCAAGGCTCTGATAATGGATCATCTAATTTAGAAGATTGTATTACTGTTCACGGCTCTGGTATCATAAATGATGCTCGAAACCAATTGGCCCATGGTGATGTCACCATGCACCCTGAGAATTGTGAGACAGAAAAACCATTCCCAAATTCTAATATTTTAGCTGGATCTGGTGAAGGGAACACAAAGAAGATAAAAAAGAGAAAAGCTAGAACACAATTTAATATTTTGAGTTCAGAGATGGAATCCTTATCTCCAGATCATGTGAATCCTGATAACCTTGCAAATAATGTGGACGGAGGTACAGTTCTATTGTCGAAAGATCCATCTGCTTCTAAAGTTTTAGATCAGTCTGTTCAAAACGATGTTGAGTCAATAACTGGTTTGGATGGGGTTACTGCTTTACATGAGGAAGGGGAGTTTTTAGAGACTCAGTTTTATGCTGCAAAAAACAACAATGGTGATGCAAATGAGGTTTCACCATCTTCTAAAAGGAAAAAAGTTACAGCTAACCCAAATTTAACTCAATGTCAATCTCAAATCAGTGCTGTTATTGTGGTTACCACCACATCTGATGTTGAAGCTCCTGTCAATCTCAATGATAACCAAGAACATCAGAAAGAATTTGCGTTGTCAAGCATGGGTATGTGTGTACCGACTTCTGTTCAGTCAATGCTTTCTGTTCAGTCAATGCCTTATTCAGAGAGTATTACTAAAATGTCTGACAATATTTTGAGTGGAGGATCTTTTGACTCTACTGATGCAAATAGGGAAACCATGAGTTCCGAGTATTCTGAATTACAACACTCAGATATAGTCTCTTTTTCACCATGTGAGGACTTAGCATTTCAAAACGATCAATTCTCACCATTGGAAGGTGAGTTCATAGGAAACATTACTCCAGTTGTGCTTGTGAGTAATACTCAAATTGATGTTTTAGGTGTTGGAAATACAATGGCAGAAAAGACTGATCTACAGGCCGTTAAGGAACATTATCAATATAGAGAATTTGTGCAAAGGTCACCAAGAGCTGACATGGAACCTAATGATCTCAATGTTAAGAATGATTTGCTTGCTCAGCAGAACCTTATGTCCTGTCCAACTAGTGGTGATGAAGTCACTACAAGTAATTCGAATGATGAATTCACTGTGGATGCACCTGGTGCATTATCAGATATATTTTCTCAAGGGATGGCATCTGAAGTACCAGATAAAAGGATTTTAGAATTGACAGCTATCAATGATGAAAATATTTGTGGGGTTGAAGAAAATACTTCGTCAGTACATCAGACGAAACATAATAGTAGGTCAGATAGTGCATTTGGACACAGTAATATGATAACAAAGAAAACAATTTCAGAACCATCCCAAGTTTCTTCCAAAGTTACAACTCATGCTCTAAATTCATATCGTTTTGGGTCGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAACTTTTCCAGGTCATTCTTTTACCTTTTTGAAGTCGGAGACAAAGACATCTGCCTCTTCAACTCATGTGTCAAAGCCTCGAACTTGGCATCGGACAGGTAATAATCCCCCTATTTCTTTACCTAGAATCAATTCAGTAAGAGCAGTTCCTCCCAAAAGGCCAATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCGTATGTTCGTAATGGAAACAGTCTTGTAAGGAAACCTACTCCAGTTCCTGCTTTACCTCAAATTTCCTCTGTAAACAAGTCATCTTCGGGCTTGGGTGAAATATCAAAAAGCACTAAATCTGAAAGCAGGGCTGACGTGACAGATCAACCAATGTACCTGAGAGCAGGAGCAAGATTTTCTCAGCAGAGGCAGAGACAGAGAACACCTCCACTACCAATTGACATCAAATCAGAGGAAAATACATCTTCCTCATTGGTAGAACCTCATTCTGGTGGTTCCTGTGAAAATGTATCTGATCCTAAAACATTTATAGAAATTAATAATAATGCACAGAACTCTTCTGAAGATGCACTGAAGCATTGTGAAATTCCAGAAAATCAACATGTTCCATCTGATAATGGGGAGAGTCAAGTTGAAGCAAACGAAGGCAATCCCCTTTCTTTGAATATGAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCGCGTGATGTTTCTCTCTCCACTGATGACAATGGCCAAACTGCCTTCTCTGATGGCTACTACAAGAGAAGAAAAAATCAGTTGGTTAGGACTACATTTGAAAGCCATTCCAACCAGACTGCTGCAGTGCCTAATGGCACAGCAAATTCTGATGGACAAGGAACTAGTAATGCTCTTTGCAATACGAGGTTTAGTAAGAAGCGGTTACATAAGGCTGTCAGGAGTTCATGCAAACGTTCAAGAGCCTCACTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAAGAATTCACGTCATAATCAAAAGGTTTTGCCTCAATTGTTTCGATGGAAAAGAGCAACATTTTCTTCAAGTTTCAATAGTAGTTCCGTATCTGCAATCAGCAAAAAATTGCTTCAATTGAGAAAGAGGGATACTGTTTACACTAGGTCAAAACACGGGTTTTCACTTTGGAAATCCAGAGTTTTAGGTGTTGGTGGTTGTAGTTTGAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAAGCTACACTTGCTGTTGCTGCTGTAGAGAGGAAGAAGAGAGAGCAGAAAAATGTGGTTTGCATCAGTTCTCAGTCAAAGAGTAGGAAGCATTCTTTCCAAGAGTTGGTTGAATTTGCAGGAGAGCGAATATTTCGTATTGGTTCAGTTCGTTACAGAATGGATCCCACCAGGAGGACACTCCAGAGGATTTCAGTTGATGAATCCCAGTCCTCGGCATCTACCAGTTCAGGTTTGGCCTCCAAAAGTGCTTACATTCCAAGGAGATTAGTGATTGGAAACGATGAATATGTACGAATTGGAAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACCAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTAACGCACCAGGTTATTCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGTAATTGTCCATATAGACATGTCAATGTGAACCCCAATGCATCGATTTGTGAAGGATTTCTCAGGGGATATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTGAAGGATCCAAATGCAAACTCCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAAACACACCAGAGGACGCTATTTTGGTTTTATTCCTGCTGATGTTTCTGAATCTGGGATGATGGTTGCTCCAAACCGACATAAACAAAGTAGTGAAATTGAAGAGGAACTGTCTGACTACATCAGCCTTGATGTTGTCAGTGAAGAAGTCGCAGACACGGATGATCTATCATTTGATCCAGCAGTGTTCTGTGATAATGATTCCTTGGATGATCTTGATGAACTCATTAAACCAGTTCTTCTACTGAAAACAAAGTTCACATCACAATCACCTAACTCACATATCCTCCACGCAACTGGCGGAGACTTCGGTCGTTTGTTAATGAGGTAA 4917 0.3954 MDSDLGSGEKNKRVSVSDGYYSGLHQPYRVSSVVVVDLNRSPCKRNDSSGLGKEVNVRKSVQDSSSRSRTREADDSRGQNAVPNSVKAGNVCSGKSTITVVKKKKIVKRLVKKASANSRTSVPNSLQKRLPGTVKVESAALISSTASIPEKIQANSDDKSNIYDEGPDCLHSLPKEGSVLKEDKEGGLLQLSLGPDYTSQECYKDSDNRELSRFEIERDENIPKFSSRASSSEDKKSDSDCLDVNNDVLDNGNIIFMHDNANTSDCLAANNSVPGTIAEVNHMDYDNKQLCQNEGSLSVGNYSNVQSPLNNNLVDAGDEILKTSDTFSSSRKIGIQDGLDCLQHASALKQGSDNGSSNLEDCITVHGSGIINDARNQLAHGDVTMHPENCETEKPFPNSNILAGSGEGNTKKIKKRKARTQFNILSSEMESLSPDHVNPDNLANNVDGGTVLLSKDPSASKVLDQSVQNDVESITGLDGVTALHEEGEFLETQFYAAKNNNGDANEVSPSSKRKKVTANPNLTQCQSQISAVIVVTTTSDVEAPVNLNDNQEHQKEFALSSMGMCVPTSVQSMLSVQSMPYSESITKMSDNILSGGSFDSTDANRETMSSEYSELQHSDIVSFSPCEDLAFQNDQFSPLEGEFIGNITPVVLVSNTQIDVLGVGNTMAEKTDLQAVKEHYQYREFVQRSPRADMEPNDLNVKNDLLAQQNLMSCPTSGDEVTTSNSNDEFTVDAPGALSDIFSQGMASEVPDKRILELTAINDENICGVEENTSSVHQTKHNSRSDSAFGHSNMITKKTISEPSQVSSKVTTHALNSYRFGSSGTKNQSGSVIPKTFPGHSFTFLKSETKTSASSTHVSKPRTWHRTGNNPPISLPRINSVRAVPPKRPILERKGNFQNTSYVRNGNSLVRKPTPVPALPQISSVNKSSSGLGEISKSTKSESRADVTDQPMYLRAGARFSQQRQRQRTPPLPIDIKSEENTSSSLVEPHSGGSCENVSDPKTFIEINNNAQNSSEDALKHCEIPENQHVPSDNGESQVEANEGNPLSLNMKRIVYIKPKTNQLVATSNSRDVSLSTDDNGQTAFSDGYYKRRKNQLVRTTFESHSNQTAAVPNGTANSDGQGTSNALCNTRFSKKRLHKAVRSSCKRSRASLVWTLCSKNSSENDKNSRHNQKVLPQLFRWKRATFSSSFNSSSVSAISKKLLQLRKRDTVYTRSKHGFSLWKSRVLGVGGCSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKNVVCISSQSKSRKHSFQELVEFAGERIFRIGSVRYRMDPTRRTLQRISVDESQSSASTSSGLASKSAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHQVIPERMPDCSYFLQGLCSNSNCPYRHVNVNPNASICEGFLRGYCADGNECRKKHSYVCPTFEATGTCTEGSKCKLHHPKKQSKGKKRKRSGDQKHTRGRYFGFIPADVSESGMMVAPNRHKQSSEIEEELSDYISLDVVSEEVADTDDLSFDPAVFCDNDSLDDLDELIKPVLLLKTKFTSQSPNSHILHATGGDFGRLLMR 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 905 997 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 1512 1530 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 41 89 - -
Vium9857g00004 1638 ProSiteProfiles Zinc finger C3H1-type profile. 1466 1493 IPR000571 GO:0046872
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 392 414 - -
Vium9857g00004 1638 Gene3D - 1411 1466 - -
Vium9857g00004 1638 ProSiteProfiles Zinc finger C3H1-type profile. 1384 1413 IPR000571 GO:0046872
Vium9857g00004 1638 ProSiteProfiles Zinc finger C3H1-type profile. 1439 1465 IPR000571 GO:0046872
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 1104 1123 - -
Vium9857g00004 1638 FunFam Zinc finger CCCH domain-containing protein 7 1467 1528 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 1504 1533 - -
Vium9857g00004 1638 Coils Coil 1249 1269 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 976 997 - -
Vium9857g00004 1638 PANTHER CCCH ZINGC FINGER 57 1612 - -
Vium9857g00004 1638 SMART c3hfinal6 1384 1412 IPR000571 GO:0046872
Vium9857g00004 1638 SMART c3hfinal6 1413 1437 IPR000571 GO:0046872
Vium9857g00004 1638 SMART c3hfinal6 1466 1492 IPR000571 GO:0046872
Vium9857g00004 1638 SMART c3hfinal6 1439 1464 IPR000571 GO:0046872
Vium9857g00004 1638 SMART c3hfinal6 1493 1515 IPR000571 GO:0046872
Vium9857g00004 1638 FunFam zinc finger CCCH domain-containing protein 3 1414 1465 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 1 23 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 919 938 - -
Vium9857g00004 1638 Gene3D - 1467 1529 - -
Vium9857g00004 1638 MobiDBLite consensus disorder prediction 852 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9857g00004 Vium-Chr9857 26156 34349 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium9857g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9857g00004 - - vum:124848982 3154.77