Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9857g00001 ATGAAAATGCTGCCAACTTCCACCGCCGGAGAGGCCAGCCAAGGTGGCCGGACGGTGGTCGTTGGAGTGAAGATGGACTCCCACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGGGATGGGAAATCGTCTTTATTTTCACTTGTCAAAGCGTTTGACTCTGTGCTTGCCGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAGTTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATTCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATCATAGTTGGAAGTCCTCAAGGTCTTCACAGAATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAAGAAGCTACCAAGGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGGGATGGATCACCAGCAACTGCAGCTGACATGAAAGGAGTTGATCAGAACCACGCAACTGGGGCGCTTAGTTCGATTCACAGGACACTTGGCAATACTTCAAAAGTGCTAGATGATGATGGGTCCGGGATGCAGGGAAAGGGTAGTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTCCTGGAATCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTGTTTGTTCTTCAAACCCAGCACTGTTTGGTTTATATTGTAACCATTCAGAAGAAGAGTCATGTGGTGATGCTTGTGATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTAATTCTAAACCAGGTTGGCCTTTGCTTCATAGGACAATTGTATCTGACAGGAAATGTTCTGAAAGATCGATGTTTCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCTTCTAGAAATCTTTCATATGCTGCACATCTTGACCAAAAAGCAAACAATTGTGGCCAAAATAAGGATCAGTTTTTGGGTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAATTAGGGACTGCCTCTGTGCCTGAACACAATCCTAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAGATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTATTTGCAACATCAAATTTCTTGCCAGAAAATTTGATTGGGAAAGGAGGAAGTAGCCAGGTATACAGAGGCTGCCTTCCTGATGGCAAGGAACTAGCTGTTAAGATCTTAAAGCCATCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTTGGATTCTGCTTTGAGGATGGTAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAAAAATCCGCTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCCATGGGTGTTGCTGAGGCTTTGGAGTATCTACATAATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCAAAATGGGCATCAACTTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTCCTCTCAGGGAGAAAGCCCATAAGTAGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCTCAAATGAGCCTTATCAAAAAGCTCCTTGGAGGTGATGGTGAGGTGATGAAGTGGGCAAGACTAGAAGTGAATGCTGTGGAAGCAGCAGAAATGGCTGATGATGAAGCTTGTCTTCCTTCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATGTGGAGGATGACTCACTCTCCATCTGCAGCGTTGAGCAAAACATCTCATTGGAAGACTACTTGAGAGGCAGGTGGAGCCGTTCATCAAGCTTTGATTGA 2232 0.435 MKMLPTSTAGEASQGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHIIVGSPQGLHRIRPCISVARYCAKKLPRDCWVLAVNNGKIVFKRDGSPATAADMKGVDQNHATGALSSIHRTLGNTSKVLDDDGSGMQGKGSGQFSDHSLAKAFLESKEFIEKKSCSVCSSNPALFGLYCNHSEEESCGDACDENPLAIVSVQTNDSNSKPGWPLLHRTIVSDRKCSERSMFRQISVVQWAMQLPSRNLSYAAHLDQKANNCGQNKDQFLGLDSKSGALVPVDAELGTASVPEHNPRSIPKELEGLHERYSSSCRLFKYQELVFATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAMGVAEALEYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPQMSLIKKLLGGDGEVMKWARLEVNAVEAAEMADDEACLPSSNLQSHLNLALRDVEDDSLSICSVEQNISLEDYLRGRWSRSSSFD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9857g00001 743 PANTHER OS08G0249100 PROTEIN 252 678 IPR046958 -
Vium9857g00001 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Vium9857g00001 743 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9857g00001 743 Pfam Protein kinase domain 400 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9857g00001 743 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Vium9857g00001 743 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Vium9857g00001 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 365 470 - -
Vium9857g00001 743 CDD USP_Like 18 149 - -
Vium9857g00001 743 Gene3D HUPs 16 153 IPR014729 -
Vium9857g00001 743 CDD STKc_IRAK 402 661 - -
Vium9857g00001 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vium9857g00001 743 FunFam Putative receptor-like serine/threonine-protein kinase 471 683 - -
Vium9857g00001 743 ProSiteProfiles Protein kinase domain profile. 396 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9857g00001 743 Gene3D Phosphorylase Kinase; domain 1 364 470 - -
Vium9857g00001 743 Gene3D Transferase(Phosphotransferase) domain 1 471 676 - -
Vium9857g00001 743 SUPERFAMILY Protein kinase-like (PK-like) 376 667 IPR011009 -
Vium9857g00001 743 Pfam Universal stress protein family 17 149 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9857g00001 Vium-Chr9857 3315 10616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9857g00001 383 666 Trihelix Transcription Factor Family AT1G68690 46.021 4.26e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium9857g00001 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9857g00001 - - gmx:100305405 1084.71