Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00014 ATGACAGAGGAAGTTCCTGGAACTGAAGAGGCTGCTGAACCTCCAGCATCACCTCAACCATCTCCTGATGTGCAACATAATATGGAAACTGAACAATTAACTCCTACAAAGTATTCTATTATGAGTAGGAATGGGGTTGGGACCGCAGGAAAACATATATCTTTACTTGTGAATCTCTTTGAAGTTTCTGTTAATGCTCCGGACACACTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAAGATAAGAGAGCAGTTGAAAGCAAGGTCATTGGGAGAAAAGTGGTTAACAGGCTTTACCAAATATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTATGATGGAGGGAAAACTTTGTACACAGCAGGTCCTCTGCCGCTAAATAAGTATGAGTTCAAGGTGCTTTTGGAGGAATCATTTAGAAAACGCCGTAGTGCTGGTGCTGATGGAAGCCTTTGTGAGGAAAGTAAAAGGTCAAAACATTCTTTTCAGCTAAAGACATTCATGGTGGAGATAAGTTTTGCAGCCAAAATACCCATGCAGTCCATTGCCTTTGTTCCGAAATGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGATTGTGGGTGTCTTTTGGTAAGGCAATCCTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCAGGTTATCATTCGAGTTTTCGTTCCACACCGCGAGGATTGACTCTAAATATGGACGTGTCAACAACTGTGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTTTATTGACTGGGAAAAGGCCAAAAAGGTTCTTAAAAATTTAAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAGCAACTTTTTAGTATGAAGGTTAAAAATGACAACGGCAGTAATGAAGGACAGACGGTGGAGATTACTGTATATGAATATTTTGTAAAACATTGTGGCATTGATCTGCCCTCATCTTATTATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTTACCAATGCAAAGAGCATCTTTAGTTGAGAAGTCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAACTATTGCTGTGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCACAGTTGAAGGTTGGCCAAAATGATGTTTGCATCCCATGTAATGGAAGGTGGAATTTAAAAAAAAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACTTATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCACATTCTTTGGTAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTAAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGTGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATCGGTGTTGCCACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAACATACTTCTCAAAATTAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTTGCCATCTTCCCTTAATTAAAGATACCCCAACAATCATTTTGGGGATGGATGTCTCTCACAGAGGTCAATTAGATATTCCATCAGTTGCAGCTGTTGTTGGATCTCGATGTTGGCCATTGATTTCAAGGTATAGAGCGTCTGTGAGATTGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCATTAGAAAATGGGGGTGACGATGGTATTATCAGGGAATTGCTGCTAGATTTCTATGATTCAAGTAACAGCCGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTAAGTGAATCACAATTTCAACAAGTTTTGACTGTCGAGCTTGACCAGATAATAAAGGCCTATCAACGTCTCGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAAGCTGTTTCAGGCTAATAGTCCGGAAAATGTTCCTCCAGGGACTGTTGTGGACACAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCAGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCGGCAGCTCAGATTGGACGATTTTTGGATGTTAATGATTTATCAGAAACGGGCTTAAGTTCTACTGCAGAGCTTCCAAGATTGCATAAAAATATCAGGAGTTCCATGTTCTTCTGTTGA 2679 0.4091 MTEEVPGTEEAAEPPASPQPSPDVQHNMETEQLTPTKYSIMSRNGVGTAGKHISLLVNLFEVSVNAPDTLFFQYSVAITLEDKRAVESKVIGRKVVNRLYQIYSSELGGKRFAYDGGKTLYTAGPLPLNKYEFKVLLEESFRKRRSAGADGSLCEESKRSKHSFQLKTFMVEISFAAKIPMQSIAFVPKWVDSDANSEDALRVLDTVLRQRAADCGCLLVRQSFFHDDPRNFTDVGAGVTAVSGYHSSFRSTPRGLTLNMDVSTTVIIKPGPVIDFLLSNQQVKEPRFIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDNGSNEGQTVEITVYEYFVKHCGIDLPSSYYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALLPMQRASLVEKSRQKPQDRIKILKNAVGNYCCDDDPVLAACGISVDKQLALVEGRVLEAPQLKVGQNDVCIPCNGRWNLKKKTLLQPSHIDYWAVVNFSARCDTSYLSRELIRCGMSKGINIERPHSLVEEEPQLRRSNPVARVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEIGVATQCISPVKITDQYLNNILLKINSKLGGINSLLAMEHSCHLPLIKDTPTIILGMDVSHRGQLDIPSVAAVVGSRCWPLISRYRASVRLQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNSRKPTQFIVFRDGVSESQFQQVLTVELDQIIKAYQRLGEDDVPKFTVIVAQKNHHTKLFQANSPENVPPGTVVDTAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQIGRFLDVNDLSETGLSSTAELPRLHKNIRSSMFFC 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00014 892 CDD PAZ_argonaute_like 270 387 - -
Vium9852g00014 892 SUPERFAMILY PAZ domain 265 425 IPR036085 GO:0005515
Vium9852g00014 892 Gene3D - 452 618 - -
Vium9852g00014 892 FunFam Protein argonaute 7 265 392 - -
Vium9852g00014 892 ProSiteProfiles Piwi domain profile. 557 863 IPR003165 GO:0003676
Vium9852g00014 892 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 31 864 - -
Vium9852g00014 892 SUPERFAMILY Ribonuclease H-like 541 861 IPR012337 -
Vium9852g00014 892 Pfam Piwi domain 557 861 IPR003165 GO:0003676
Vium9852g00014 892 Pfam PAZ domain 274 400 IPR003100 GO:0005515
Vium9852g00014 892 Pfam N-terminal domain of argonaute 51 208 IPR032474 -
Vium9852g00014 892 SMART PAZ_2_a_3 271 410 IPR003100 GO:0005515
Vium9852g00014 892 SMART DUF1785_2 218 270 IPR014811 -
Vium9852g00014 892 Gene3D - 624 892 IPR036397 GO:0003676
Vium9852g00014 892 ProSiteProfiles PAZ domain profile. 295 388 IPR003100 GO:0005515
Vium9852g00014 892 MobiDBLite consensus disorder prediction 1 26 - -
Vium9852g00014 892 Pfam Argonaute linker 1 domain 220 269 IPR014811 -
Vium9852g00014 892 Pfam Argonaute linker 2 domain 418 459 IPR032472 -
Vium9852g00014 892 CDD Piwi_ago-like 432 857 IPR045246 -
Vium9852g00014 892 FunFam Protein argonaute 3 625 892 - -
Vium9852g00014 892 SMART Piwi_a_2 557 863 IPR003165 GO:0003676
Vium9852g00014 892 Gene3D paz domain 264 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00014 Vium-Chr9852 132704 143995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00014 43 892 Eukaryotic Initiation Factors Gene Family AT5G43810 35.484 3.36e-153 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00014 K11593 - gmx:100778875 1469.91