Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00013 ATGACAGAGGAAGTTCCTGGAACTGAAGAGGCTGCTGAACCTCCAGCATCACCTCAACCATCTCCTGATGTGCAACATAATATGGAAACTGAACAATTAACTCCTACAAAGTATTCTATTATGAGTAGGAATGGGGTTGGGACCGCAGGAAAACATATATCTTTACTTGTGAATCTCTTTGAAGTTTCTGTTAATGCTCCGGACACACTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAAGATAAGAGAGCAGTTGAAAGCAAGGTCATTGGGAGAAAAGTGGTTAACAGGCTTTACCAAATATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTATGATGGAGGGAAAACTTTGTACACAGCAGGTCCTCTGCCGCTAAATAAGTATGAGTTCAAGGTGCTTTTGGAGGAATCATTTAGAAAACGTGCTGGTGCTGATGGAAGCCTTTGTGAGGAAAGTAAAAGGTCAAAACATTCTTTTCAGCTAAAGACATTCATGGTGGAGATAAGTTTTGCAGCCAAAATACCCATGCAGTCCATTGCCTTTGTTCCGAAATGGGTTGACTCAGATGCCAATTCTGAAGATGCGTTGAGGGTGCTTGATACTGTACTGAGGCAGCGTGCAGCTGATTGTGGGTGTCTTTTGGTAAGGCAATCCTTTTTTCATGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCAGGTTATCATTCGAGTTTTCGTTCCACACCGCGAGGATTGACTCTAAATATGGACGTGTCAACAACTGTGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTTTATTGACTGGGAAAAGGCCAAAAAGGTTCTTAAAAATTTAAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAGCAACTTTTTAGTATGAAGGTTAAAAATGACAACGGCAGTAATGAAGGACAGACGGTGGAGATTACTGTATATGAATATTTTGTAAAACATTGTGGCATTGATCTGCCCTCATCTTATTATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTTACCAATGCAAAGAGCATCTTTAGTTGAGAAGTCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAACTATTGCTGTGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCACAGTTGAAGGTTGGCCAAAATGATGTTTGCATCCCATGTAATGGAAGGTGGAATTTAAAAAAAAAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACTTATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCACATTCTTTGGTAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTAAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGTGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATCGGTGTTGCCACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAACATACTTCTCAAAATTAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTTGCCATCTTCCCTTAATTAAAGATACCCCAACAATCATTTTGGGGATGGATGTCTCTCACAGAGGTCAATTAGATATTCCATCAGTTGCAGCTGTTGTTGGATCTCGATGTTGGCCATTGATTTCAAGGTATAGAGCGTCTGTGAGATTGCAGGCATCTAAGGTAGAGATGATTGATGCTCTATACAAGCCATTAGAAAATGGGGGTGACGATGGTATTATCAGGGAATTGCTGCTAGATTTCTATGATTCAAGTAACAGCCGCAAGCCAACTCAATTTATTGTCTTCAGGGATGGAGTAAGTGAATCACAATTTCAACAAGTTTTGACTGTCGAGCTTGACCAGATAATAAAGGCCTATCAACGTCTCGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAAGCTGTTTCAGGCTAATAGTCCGGAAAATGTTCCTCCAGGGACTGTTGTGGACACAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCAGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGAACCAAAGAAGCACGACTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCGGCAGCTCAGATTGGACGATTTTTGGATGTTAATGATTTATCAGAAACGGGCTTAAGTTCTACTGCAGAGCTTCCAAGATTGCATAAAAATATCAGGAGTTCCATGTTCTTCTGTTGA 2673 0.4085 MTEEVPGTEEAAEPPASPQPSPDVQHNMETEQLTPTKYSIMSRNGVGTAGKHISLLVNLFEVSVNAPDTLFFQYSVAITLEDKRAVESKVIGRKVVNRLYQIYSSELGGKRFAYDGGKTLYTAGPLPLNKYEFKVLLEESFRKRAGADGSLCEESKRSKHSFQLKTFMVEISFAAKIPMQSIAFVPKWVDSDANSEDALRVLDTVLRQRAADCGCLLVRQSFFHDDPRNFTDVGAGVTAVSGYHSSFRSTPRGLTLNMDVSTTVIIKPGPVIDFLLSNQQVKEPRFIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQLFSMKVKNDNGSNEGQTVEITVYEYFVKHCGIDLPSSYYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALLPMQRASLVEKSRQKPQDRIKILKNAVGNYCCDDDPVLAACGISVDKQLALVEGRVLEAPQLKVGQNDVCIPCNGRWNLKKKTLLQPSHIDYWAVVNFSARCDTSYLSRELIRCGMSKGINIERPHSLVEEEPQLRRSNPVARVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEIGVATQCISPVKITDQYLNNILLKINSKLGGINSLLAMEHSCHLPLIKDTPTIILGMDVSHRGQLDIPSVAAVVGSRCWPLISRYRASVRLQASKVEMIDALYKPLENGGDDGIIRELLLDFYDSSNSRKPTQFIVFRDGVSESQFQQVLTVELDQIIKAYQRLGEDDVPKFTVIVAQKNHHTKLFQANSPENVPPGTVVDTAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQIGRFLDVNDLSETGLSSTAELPRLHKNIRSSMFFC 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00013 890 Pfam Argonaute linker 1 domain 218 267 IPR014811 -
Vium9852g00013 890 SUPERFAMILY PAZ domain 263 423 IPR036085 GO:0005515
Vium9852g00013 890 Gene3D - 622 890 IPR036397 GO:0003676
Vium9852g00013 890 Pfam Argonaute linker 2 domain 416 457 IPR032472 -
Vium9852g00013 890 CDD Piwi_ago-like 430 855 IPR045246 -
Vium9852g00013 890 ProSiteProfiles Piwi domain profile. 555 861 IPR003165 GO:0003676
Vium9852g00013 890 SMART DUF1785_2 216 268 IPR014811 -
Vium9852g00013 890 Pfam Piwi domain 555 859 IPR003165 GO:0003676
Vium9852g00013 890 SUPERFAMILY Ribonuclease H-like 539 859 IPR012337 -
Vium9852g00013 890 SMART PAZ_2_a_3 269 408 IPR003100 GO:0005515
Vium9852g00013 890 Pfam PAZ domain 272 398 IPR003100 GO:0005515
Vium9852g00013 890 CDD PAZ_argonaute_like 268 385 - -
Vium9852g00013 890 SMART Piwi_a_2 555 861 IPR003165 GO:0003676
Vium9852g00013 890 FunFam Protein argonaute 3 623 890 - -
Vium9852g00013 890 MobiDBLite consensus disorder prediction 1 26 - -
Vium9852g00013 890 Gene3D paz domain 262 390 - -
Vium9852g00013 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 31 862 - -
Vium9852g00013 890 Gene3D - 450 616 - -
Vium9852g00013 890 FunFam Protein argonaute 7 263 390 - -
Vium9852g00013 890 Pfam N-terminal domain of argonaute 51 206 IPR032474 -
Vium9852g00013 890 ProSiteProfiles PAZ domain profile. 293 386 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00013 Vium-Chr9852 132703 143995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00013 43 890 Eukaryotic Initiation Factors Gene Family AT5G43810 35.674 1.04e-153 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00013 K11593 - gmx:100778875 1467.6