Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00012 ATGAAGAGTACTTTGTTTGTTACAGTTCCTATGGCTCTCTCTATCAGACCCTCTGTGAGAGTGCAGCCTGAACAAAGAGATTGGATCAGCTGCTTCGATTCTCTGTTGGCGAGGTTGGTGTCGTGCGGCATCTGCTCACCGGACAAACACGACACCAGTGACGAGGAGATACCAAACTTGGAGGTAATCGAGGTGGTGGCGGACGGTGGCTACGGGCGAGTCTACCGGTGCCTCGATCCTGCCTCCGGCAACGTCTTCGCCGTGAAACAGATCGCAATAATCGGCGCGTTCCAGGGTGTACCGTCTGCGATCATCCGCGAAGTGTCGCTCCTCAAAGAACTCCACCATAAGAACATTGTGAAGTTGCTTAAAGTCTATGTGAAGGGAGAAAGACATGTCAATCTTGTCTTCGAGCATGTCCAGGGCGACCTTCATGACTATATTAGGCACAAGCGTTATCGCAATTACGCGATTATAAAGAGTTTCATGCAGCAGATACTCGCTGCTCTGGAATTCTGCCATTCGCGTAAGGTTCTGCATAGAGATTTGAAACCCGGCAATGTGCTGGTTGATGAACCCAATTTGCAGATCAAACTTGCCGATTTTGGTTTGGCTAGAGAGTTTAGAGATGACATATCATATACTGACCAGTTAGGAACTGCCTGGTACAGGGCACCTGAAATGTTGTGCGACAACTGTCAATATTCATCTCCAATTGATTTGTGGGCTGCTGGCTGTGTATTTGCTGAGATGCTAATTGGAGGACCTCTATTCATAACTAATAAGAACCGGGATGAGTTGCAGGCAATTTTCAGACTGTTAGGTACTCCTACAGAGGATACATGGCCAGGAATCACTCAATTAATGCCTAGCCTTCATAATAAGTACCCGAAATATAATCCAGTGGGCATGGACAAACTCTTTCCTCAACTGGATGAAAGTGGCCAGAATCTTCTTGCAAGATTGCTTTGCTTGAACCCAATTGAAAGGATTTCTGCATCAGCCGCTCTAAACCATGATTACTTCAAGGATGTTGATTTGATTTGGGAAGGAAATCCAAGGGAGCTGTCGTCGAGTTGCATTCCTTTTCGATGA 1095 0.4658 MKSTLFVTVPMALSIRPSVRVQPEQRDWISCFDSLLARLVSCGICSPDKHDTSDEEIPNLEVIEVVADGGYGRVYRCLDPASGNVFAVKQIAIIGAFQGVPSAIIREVSLLKELHHKNIVKLLKVYVKGERHVNLVFEHVQGDLHDYIRHKRYRNYAIIKSFMQQILAALEFCHSRKVLHRDLKPGNVLVDEPNLQIKLADFGLAREFRDDISYTDQLGTAWYRAPEMLCDNCQYSSPIDLWAAGCVFAEMLIGGPLFITNKNRDELQAIFRLLGTPTEDTWPGITQLMPSLHNKYPKYNPVGMDKLFPQLDESGQNLLARLLCLNPIERISASAALNHDYFKDVDLIWEGNPRELSSSCIPFR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00012 364 PANTHER CELL DIVISION PROTEIN KINASE 61 343 - -
Vium9852g00012 364 ProSiteProfiles Protein kinase domain profile. 60 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9852g00012 364 SMART serkin_6 60 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9852g00012 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vium9852g00012 364 Gene3D Transferase(Phosphotransferase) domain 1 141 354 - -
Vium9852g00012 364 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Vium9852g00012 364 FunFam CMGC family protein kinase 142 347 - -
Vium9852g00012 364 SUPERFAMILY Protein kinase-like (PK-like) 58 346 IPR011009 -
Vium9852g00012 364 Pfam Protein kinase domain 62 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00012 Vium-Chr9852 129353 132137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00012 61 345 Core Cell Cycle Gene Families AT3G48750 44.444 4.33e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vium9852g00012 Pkinase 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00012 K02206 - gmx:100810997 383.645