Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00011 ATGACTTGCTTCCCATTCTCATTTGGTAGGAAAGTGCCCCCTGTGGCAAGACACAATCCAGATATTGATGAAGAACTCTCTGGCGTTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAGAGTTGCATCTGACAATTTCAGTCAGGCCAATAAAATTGGGCAGGGTGGCTTTGGTTTTGTTTATAAGGGATTACTAAAAGATGGGAATCTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATTTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGATGTTGTGTGGAAGGGAACAATCGAATACTAGTCTACAATTATCTTGAGAACAATAGCCTTGCACAAACCCTTTTAGGTTCAGGTCACAGTAGTAACATCTTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAATAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAATCTTATACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACACGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTCACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACGGTTACCGATAGGAGAGCAGTTTATTTTAGAAACGACATGGGAGCTTTATCAGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGACGGGCATTTTGATGCAGAGGAGGCCTGTAAATTTCTGAAAATTGGACTTCTTTGCACTCAGGACACATCGAAACTCCGGCCACCAATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAATGGACATAGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGATCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGGCATTTACTGCAAGTACAAGTACAACCACAACCTTCACTCTTAAATATGATCAAAGCTTGTAA 1170 0.4 MTCFPFSFGRKVPPVARHNPDIDEELSGVQNVRIFTYKELRVASDNFSQANKIGQGGFGFVYKGLLKDGNLAAIKVLSAESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLAQTLLGSGHSSNIFFDWKTRSRICIGIARGLSYLHEEIRPHIVHRDIKASNILLDKNLIPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFILETTWELYQRRELVALVDASLDGHFDAEEACKFLKIGLLCTQDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSASDSQGNTMAFTASTSTTTTFTLKYDQSL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00011 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vium9852g00011 389 SUPERFAMILY Protein kinase-like (PK-like) 24 319 IPR011009 -
Vium9852g00011 389 CDD STKc_IRAK 53 321 - -
Vium9852g00011 389 FunFam cold-responsive protein kinase 1 18 122 - -
Vium9852g00011 389 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9852g00011 389 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vium9852g00011 389 Gene3D Transferase(Phosphotransferase) domain 1 123 334 - -
Vium9852g00011 389 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Vium9852g00011 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Vium9852g00011 389 Pfam Protein kinase domain 48 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9852g00011 389 SMART serkin_6 47 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9852g00011 389 FunFam cold-responsive protein kinase 1 123 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00011 Vium-Chr9852 122576 127027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00011 17 338 Receptor kinase-like Gene Family AT1G56120 51.852 1.01e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium9852g00011 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00011 - - gmx:100800503 655.21