Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00008 ATGTCTCAATCTAACAACCCCAAAATGCATTCCTCCGCCACTTCCCTCCGCCACCTTCCGCCGCTCAAGAGATTCCGACTCATTCAACAACAACAAACACACCAAAATCACTTTTCTGACTCTTCCCCTTTACCCGCCAAAAAACGCAGAGAATCGAGAACCCCTTCTCCTCCTTCCCCCCTTCACAACTTCTCCCTCCCCGCCAAAAAACGAGTGTGGGCCCCACGCCCCCAAACTCCTCCTTCCTCAAACGACATCGTTTCCCCTCCCCAGCCCTCCTCTGACGACGCCGCACCCCCCTTTGATCTCAACATCGAATACAACCCCAACCTCGGAGAATCCGAAAACAACGCGGCCGACGATGACGACGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGGGATCCTGCCGACCCAATCGTGTTCTGCGACGGGTGCGACCTCACGGTGCACGCCTCCTGCTACGGCCACCCTTTGTCGAAGGGAGTCCCCGACGGCGACTGGTTCTGCGAACGGTGTCGTGTCGGGGAAGGCAAGAGCGGCACGCGCTGCGCGCTGTGTCCCGCGAGTGAGGGCGCGATGAAGCGCACCGCGGACGGCGCGTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGACCCAGAAGGGAGGGAGGGGATCGACTGCTCCATGGTTCCGAGGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTTGTGACGGTTGCGGTCTGGTGTGCTCCGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACATGCGCGCTGAAGGAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGGGGCACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAGATTTGGGAAAAGCAATCTGGGAAGTACAAGATTGTCCCTCTTGAAGATGAAAAGTAG 942 0.5807 MSQSNNPKMHSSATSLRHLPPLKRFRLIQQQQTHQNHFSDSSPLPAKKRRESRTPSPPSPLHNFSLPAKKRVWAPRPQTPPSSNDIVSPPQPSSDDAAPPFDLNIEYNPNLGESENNAADDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKGVPDGDWFCERCRVGEGKSGTRCALCPASEGAMKRTADGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPRKRWSQRCYLCECCDGCGLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGGTIVAGFCKTHTQIWEKQSGKYKIVPLEDEK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00008 313 ProSiteProfiles Extended PHD (ePHD) domain profile. 182 294 IPR034732 -
Vium9852g00008 313 MobiDBLite consensus disorder prediction 1 116 - -
Vium9852g00008 313 SUPERFAMILY FYVE/PHD zinc finger 119 189 IPR011011 -
Vium9852g00008 313 Pfam PHD-finger 127 175 IPR019787 -
Vium9852g00008 313 MobiDBLite consensus disorder prediction 26 42 - -
Vium9852g00008 313 CDD PHD_BRPF_JADE_like 126 174 - -
Vium9852g00008 313 ProSiteProfiles Zinc finger PHD-type profile. 124 177 IPR019787 -
Vium9852g00008 313 ProSitePatterns Zinc finger PHD-type signature. 127 174 IPR019786 -
Vium9852g00008 313 PANTHER PHD FINGER PROTEINS 115 294 - -
Vium9852g00008 313 Pfam PHD-zinc-finger like domain 184 292 - -
Vium9852g00008 313 SMART PHD_3 239 294 IPR001965 -
Vium9852g00008 313 SMART PHD_3 126 175 IPR001965 -
Vium9852g00008 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 296 IPR013083 -
Vium9852g00008 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00008 Vium-Chr9852 84224 85511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00008 29 313 C2H2 Transcription Factor Family AT3G14740 47.720 2.56e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium9852g00008 zf-HC5HC2H_2 3e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00008 K11380 - gmx:100802652 447.973