Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00006 ATGGTTCAGCTGTGGGCTTTGCCGTTGTTTGCATTTATCACAGTCCTGATTGAGAGATCCATATATGATGAATCTTTGAATATTTGCAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTCAAAGTTATCAGCAATCAACTAATCGATTGCTCATATTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGAAAAGTCCTGGATGATAACTTCAAAGAATATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTATTTCACAGAAAGAACACCTCGGTCACATTTTGATTATGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGACGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGTGTGGGCCTTCCGCGAAGCAAGGTAACATCAGATGGAGTTAAGTTTCCTGTTGAGAGGAAACCGTGTTTGAAGGAACCACCAACTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGACCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAACGTCCTCGACCTTAAGAAAGAGAATTACTTCTCTTGTTCCATTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCATCCGACGATGTTGTTTCATTTCTGAAGGAACTAGCTAATGCTTCTATCCGAACGTAG 1215 0.4173 MVQLWALPLFAFITVLIERSIYDESLNICSELNDTVIEAQLRTRQVPPQLPTKTAIQSYQQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDYEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGVKFPVERKPCLKEPPTKSGPKSSQNKATRPVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCSIGRTRTNARYTLDSSDDVVSFLKELANASIRT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00006 404 Pfam Trehalose-phosphatase 87 288 IPR003337 GO:0003824|GO:0005992
Vium9852g00006 404 CDD HAD_TPP 66 299 - -
Vium9852g00006 404 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 399 IPR001830 GO:0003824|GO:0005992
Vium9852g00006 404 MobiDBLite consensus disorder prediction 307 348 - -
Vium9852g00006 404 SUPERFAMILY HAD-like 65 253 IPR036412 -
Vium9852g00006 404 Gene3D - 69 292 IPR023214 -
Vium9852g00006 404 FunFam Alpha,alpha-trehalose-phosphate synthase 89 159 - -
Vium9852g00006 404 Gene3D - 155 237 - -
Vium9852g00006 404 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 155 237 - -
Vium9852g00006 404 MobiDBLite consensus disorder prediction 319 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00006 Vium-Chr9852 71495 76081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00006 28 401 Trehalose Biosynthesis Gene Families AT1G78580 66.582 4.02e-180 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00006 K16055 - vum:124848969 815.839