Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9852g00003 ATGCCTGGGAACAAGTACCCCGGAAACTCGAACCAAATACCGGGGCGTGTGGAACGGCTTCTCAGAGAGAGAGAGCTTAGGAAGAGTGGGAGAGTGATTCAATTGAAGGAGGGGAATGAGGTCAATGGGAGCAGTGGTGAGGCTTTCGAGAAGGAGAAGGCGCGTTTGAGGGAAGAAGTGAGCGACGCGGGTGATGGTGTTGAAGGGAGTAGGGTGAGGAAAGGGGTGGGGGAAGAGAGGCATGAAACGAAGCCGTTTAGGCAGAGGCTGTTGGTGGTTGCTAATAGGTTGCCGGTGTCGGCGGTAAGGAAAGGCGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGTGGTCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGACGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATATATTGTGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTTCAGTCTCAGTTTGAGGCGTATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTAAAGAAACATAACAAAAAAATGAAAGTTGGATGGTTTCTCCACACCCCTTTCCCTTCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCCGTTCTCGCTGCTGATTTAGTTGGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCGGAACGATTTATACGAGCTCTTGACCTTCCCGCAGTACAAGATCACATCAAAGAACTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCGCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAGATCCTTATTGGCGTGATAAAGTTGTTCTACTACAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGACGCATCAATGGCAGATTTGGAACGTTGACTACGGTTCCTATACATCACTTGGATCGCTCACTTGACTTTTATCAACTATGTGCTTTGTACGCTGTTACTGATGTAGCACTAGTCACTTCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAAAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCCGGTGCAGCACAGTCTCTTGGGGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACAGAAGTTGCGGCTGCAATTGGCAGGGCTCTGAAGATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACCTTCGTAAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTCAAAGTTATCAGCAATCAACTAATCGATTGCTCATATTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGAAAAGTCCTGGATGATAACTTCAAAGAATATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTATTTCACAGAAAGAACACCTCGGTCACATTTTGATTATGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGACGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGTGTGGGCCTTCCGCGAAGCAAGGTAACATCAGATGGAGTTAAGTTTCCTGTTGAGAGGAAACCGTGTTTGAAGGAACCACCAACTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGACCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAACGTCCTCGACCTTAAGAAAGAGAATTACTTCTCTTGTTCCATTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCATCCGACGATGTTGTTTCATTTCTGAAGGAACTAGCTAATGCTTCTATCCGAACGTAG 2778 0.4428 MPGNKYPGNSNQIPGRVERLLRERELRKSGRVIQLKEGNEVNGSSGEAFEKEKARLREEVSDAGDGVEGSRVRKGVGEERHETKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPAVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEEDPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFYQLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIGRALKMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPQLPTKTAIQSYQQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDYEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGVKFPVERKPCLKEPPTKSGPKSSQNKATRPVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCSIGRTRTNARYTLDSSDDVVSFLKELANASIRT 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9852g00003 925 CDD HAD_TPP 587 820 - -
Vium9852g00003 925 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 89 554 IPR012766 GO:0003825|GO:0005992
Vium9852g00003 925 Gene3D Glycogen Phosphorylase B; 80 335 - -
Vium9852g00003 925 MobiDBLite consensus disorder prediction 840 868 - -
Vium9852g00003 925 FunFam Alpha,alpha-trehalose-phosphate synthase 610 680 - -
Vium9852g00003 925 Gene3D - 590 813 IPR023214 -
Vium9852g00003 925 Gene3D - 676 758 - -
Vium9852g00003 925 SUPERFAMILY HAD-like 586 919 IPR036412 -
Vium9852g00003 925 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 676 758 - -
Vium9852g00003 925 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 336 538 - -
Vium9852g00003 925 CDD GT20_TPS 89 554 IPR001830 GO:0003824|GO:0005992
Vium9852g00003 925 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 81 335 - -
Vium9852g00003 925 Pfam Trehalose-phosphatase 608 809 IPR003337 GO:0003824|GO:0005992
Vium9852g00003 925 Gene3D Glycogen Phosphorylase B; 336 539 - -
Vium9852g00003 925 Pfam Glycosyltransferase family 20 89 554 IPR001830 GO:0003824|GO:0005992
Vium9852g00003 925 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 556 - -
Vium9852g00003 925 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 81 920 IPR001830 GO:0003824|GO:0005992
Vium9852g00003 925 MobiDBLite consensus disorder prediction 57 79 - -
Vium9852g00003 925 MobiDBLite consensus disorder prediction 828 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9852g00003 Vium-Chr9852 51017 71377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9852g00003 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.844 0.0 1450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9852g00003 K16055 - gmx:100797320 1681.38