Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium9852g00003 | ATGCCTGGGAACAAGTACCCCGGAAACTCGAACCAAATACCGGGGCGTGTGGAACGGCTTCTCAGAGAGAGAGAGCTTAGGAAGAGTGGGAGAGTGATTCAATTGAAGGAGGGGAATGAGGTCAATGGGAGCAGTGGTGAGGCTTTCGAGAAGGAGAAGGCGCGTTTGAGGGAAGAAGTGAGCGACGCGGGTGATGGTGTTGAAGGGAGTAGGGTGAGGAAAGGGGTGGGGGAAGAGAGGCATGAAACGAAGCCGTTTAGGCAGAGGCTGTTGGTGGTTGCTAATAGGTTGCCGGTGTCGGCGGTAAGGAAAGGCGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGTGGTCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGACGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATATATTGTGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGCCTTGCCACCACACGCAGTTTTCAGTCTCAGTTTGAGGCGTATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTAAAGAAACATAACAAAAAAATGAAAGTTGGATGGTTTCTCCACACCCCTTTCCCTTCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCCGTTCTCGCTGCTGATTTAGTTGGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCGGAACGATTTATACGAGCTCTTGACCTTCCCGCAGTACAAGATCACATCAAAGAACTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCGCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAGATCCTTATTGGCGTGATAAAGTTGTTCTACTACAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGACGCATCAATGGCAGATTTGGAACGTTGACTACGGTTCCTATACATCACTTGGATCGCTCACTTGACTTTTATCAACTATGTGCTTTGTACGCTGTTACTGATGTAGCACTAGTCACTTCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGAAAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCCGGTGCAGCACAGTCTCTTGGGGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACAGAAGTTGCGGCTGCAATTGGCAGGGCTCTGAAGATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACCTTCGTAAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTCAAAGTTATCAGCAATCAACTAATCGATTGCTCATATTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGAAAAGTCCTGGATGATAACTTCAAAGAATATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTATTTCACAGAAAGAACACCTCGGTCACATTTTGATTATGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGACGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGTGTGGGCCTTCCGCGAAGCAAGGTAACATCAGATGGAGTTAAGTTTCCTGTTGAGAGGAAACCGTGTTTGAAGGAACCACCAACTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGACCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAACGTCCTCGACCTTAAGAAAGAGAATTACTTCTCTTGTTCCATTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCATCCGACGATGTTGTTTCATTTCTGAAGGAACTAGCTAATGCTTCTATCCGAACGTAG | 2778 | 0.4428 | MPGNKYPGNSNQIPGRVERLLRERELRKSGRVIQLKEGNEVNGSSGEAFEKEKARLREEVSDAGDGVEGSRVRKGVGEERHETKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPAVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEEDPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFYQLCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIGRALKMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPQLPTKTAIQSYQQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDYEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGVKFPVERKPCLKEPPTKSGPKSSQNKATRPVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCSIGRTRTNARYTLDSSDDVVSFLKELANASIRT | 925 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium9852g00003 | 925 | CDD | HAD_TPP | 587 | 820 | - | - | |
| Vium9852g00003 | 925 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 89 | 554 | IPR012766 | GO:0003825|GO:0005992 | |
| Vium9852g00003 | 925 | Gene3D | Glycogen Phosphorylase B; | 80 | 335 | - | - | |
| Vium9852g00003 | 925 | MobiDBLite | consensus disorder prediction | 840 | 868 | - | - | |
| Vium9852g00003 | 925 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 610 | 680 | - | - | |
| Vium9852g00003 | 925 | Gene3D | - | 590 | 813 | IPR023214 | - | |
| Vium9852g00003 | 925 | Gene3D | - | 676 | 758 | - | - | |
| Vium9852g00003 | 925 | SUPERFAMILY | HAD-like | 586 | 919 | IPR036412 | - | |
| Vium9852g00003 | 925 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 676 | 758 | - | - | |
| Vium9852g00003 | 925 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 336 | 538 | - | - |
Showing 1 to 10 of 19 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium9852g00003 | K16055 | - | gmx:100797320 | 1681.38 |
Showing 1 to 1 of 1 entries