Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9848g00004 ATGGGGAAGCCGGCGGGTAAAAAGAAAGATCATGAGATTCCCGCTCCCACGACGAGGGCGAACGGTCACCACCAGCCGACAAAATCATGGGAGGAGAAACGAGGGGCGGCGGCGGCGGCTGCGTCGTCGTCGGCGGCGACGTCGAAGGTGCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCATGAGCTTCGAGAGGAAGGGAACCGGTTGTTTCAAAGGAAGGACCACGAGGGAGCGATGTTGAAGTACGAAAAGGCTCTGAAGCTTCTGCCGCGGAACCACATCGACATGGCGCACCTCCACACCAGCATGGCCATCTGCTACATGCAGCTGGGACTGGGCGAGTACCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACCAAGGCGCTGCTGAAGCGGGCCAAGTGCTACGAGGCGCTGAACCGCTTGGACCTGGCGATGCGGGACGTGCGCGTGGTTCTGAATTTGGAGCCCAATAACTCGACGGCGCTGGAGGTTTTGGATAGCTTGAGGGAGACGATGGAGGAGAAGGGGATTGTGCTTGATGAGACGGAGATAGCCCTCGCGGCGCTTCAGCAGCATCCGGAGCCGCCGTCTGCGCGGCTGAGGAAGGTGGTGAGGGAGAAGATCAAGAAGAATAAGAAGGAAAACAAGGGGGAGGATGAGGGGAAGGCGAAGAAGATTATCGTTGAAGAGAAGGTTAAGGCTGATAATGTTAGGAAAAAGGAAAAAGAGAAATCGGGGAAAGTGGAGAAGGGAAAATTGGGCAAGGAAGATAAAGGGAAATTGGCGAAGGAAGACAAAGGGAAACTGGGGAAAGAAGAGATAGAGAATTTGGGGAAGGAAGAAAAAGAGAAATTGGGGAAAGAAGAAAAAGGGGTTGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGATGGGCGCAATTGCCTGTGAATTGTGGAATTAGGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGACAGGGAGGGTGATTTGGTTACTATAACTAATACTTCTGAATTGAGGCTGGCTGAAACTTGTCATGTTCTTGGGTCGATTCGGCTTTATGTGACCAAGGTTGAGCCGGAAGAGGAGCCATTTTATGATGATGGGGTTGTGGCGGATGGTGAAAAGGTGAAGGCGGTTGAGAATGGGAATGGAGGTGTGGGGAAGGGGAGGAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGTTGTTTAAGAATCATGTTGGATTTGATTCAGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATGCAGTGACAAGTGAGGCTGCTCAGGAACTGTTTGAGATTGCTGCAGATAGGTTTCAGGAGATGGCGGCTTTAGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTCTTACGGAGGATGGATCGAGGGATTCTTCGTTTGAGTGTATTCAAGCTGCTTATGAATGGGCTCAGAAGGAGTATATGAAAGCAGAGAAGAGATTTGGAGAGGCTGTTAGAATCAAACCAGATTTTTATGAAGGGCTTCTTGCTCTAGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTATTTGACTGCAACCGAGAAGGATTTAGAAGTCAGCCATTCGGATGAGGTTGTGGAGCTCTTTAACAAGGCTGAGGACAACATGGAGAAAGGCATGATGATGTGGGAGGAGATGGAGGAGCGGCGATTGAATGGACTGTCCAAAACGGATAAGTATAAAGAGCAGCTAGAGAAAATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTGCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTGGCTGGAGCTTCAACAACTGATATTGGGGTCATGATAAAGAATCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGTTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCACTGTTCCGTCGGCGGGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA 2256 0.4925 MGKPAGKKKDHEIPAPTTRANGHHQPTKSWEEKRGAAAAAASSSAATSKVLDEDTAMFINMSHELREEGNRLFQRKDHEGAMLKYEKALKLLPRNHIDMAHLHTSMAICYMQLGLGEYPRAISECNMALQVSPRYTKALLKRAKCYEALNRLDLAMRDVRVVLNLEPNNSTALEVLDSLRETMEEKGIVLDETEIALAALQQHPEPPSARLRKVVREKIKKNKKENKGEDEGKAKKIIVEEKVKADNVRKKEKEKSGKVEKGKLGKEDKGKLAKEDKGKLGKEEIENLGKEEKEKLGKEEKGVVTRTVKLIYGEDIRWAQLPVNCGIRLVRDVIRDKFPGLKGVLVKYKDREGDLVTITNTSELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGVVADGEKVKAVENGNGGVGKGRSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDAVTSEAAQELFEIAADRFQEMAALALFNWGSVHMSRARKRVSLTEDGSRDSSFECIQAAYEWAQKEYMKAEKRFGEAVRIKPDFYEGLLALGHQQFEQARLCWCYLTATEKDLEVSHSDEVVELFNKAEDNMEKGMMMWEEMEERRLNGLSKTDKYKEQLEKMGLHGLFRDVSADEADEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9848g00004 751 SMART PB1_new 305 383 IPR000270 GO:0005515
Vium9848g00004 751 ProSiteProfiles TPR repeat profile. 62 95 IPR019734 GO:0005515
Vium9848g00004 751 MobiDBLite consensus disorder prediction 1 17 - -
Vium9848g00004 751 PANTHER PROTEIN CLMP1 1 749 IPR044517 -
Vium9848g00004 751 Gene3D - 298 382 - -
Vium9848g00004 751 Gene3D Tetratricopeptide repeat domain 59 187 IPR011990 GO:0005515
Vium9848g00004 751 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Vium9848g00004 751 SUPERFAMILY TPR-like 63 558 IPR011990 GO:0005515
Vium9848g00004 751 ProSiteProfiles PB1 domain profile. 305 383 IPR000270 GO:0005515
Vium9848g00004 751 SMART tpr_5 62 95 IPR019734 GO:0005515
Vium9848g00004 751 SMART tpr_5 136 169 IPR019734 GO:0005515
Vium9848g00004 751 SMART tpr_5 510 543 IPR019734 GO:0005515
Vium9848g00004 751 SMART tpr_5 100 135 IPR019734 GO:0005515
Vium9848g00004 751 CDD PB1 307 380 - -
Vium9848g00004 751 MobiDBLite consensus disorder prediction 249 276 - -
Vium9848g00004 751 SUPERFAMILY CAD & PB1 domains 305 391 - -
Vium9848g00004 751 MobiDBLite consensus disorder prediction 1 45 - -
Vium9848g00004 751 Pfam PB1 domain 305 381 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9848g00004 Vium-Chr9848 50027 54364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9848g00004 52 185 Calmodulin-binding Proteins AT3G25230 28.671 1.39e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9848g00004 K26538 - qsa:O6P43_015720 910.212