Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9848g00001 ATGCAGAACGAGGAAGGACAGATCACCGAGCTTTACATTCCTAGAAGTGTTCTGCCTACAAACAGGTTGATTACTGCGAAGAACCATGCTTCGGTTCAGAAAATTGGTCTTGTGGATGAGAATGGTACTAATGGTCAATTCTCCACCTTTGCCCTTTGCGGCTTCATCCGTGCCTCAGCATTTCTTGCTCTTAATATCCAGGGTGATGCCGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGCTGAAGTTAAGCAACAGTGA 267 0.4644 MQNEEGQITELYIPRSVLPTNRLITAKNHASVQIXIGLVDENGIXNGQFSTFALCGFIRASAFLALNIQGDADSALDRLWQKKKAEVKQQ 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9848g00001 90 Gene3D - 1 90 IPR038579 -
Vium9848g00001 90 Pfam Ribosomal protein S21e 1 84 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vium9848g00001 90 PIRSF RPS21e 1 90 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vium9848g00001 90 PANTHER 40S RIBOSOMAL PROTEIN S21 1 89 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9848g00001 Vium-Chr9848 226 1819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9848g00001 1 89 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 67.416 6.89e-41 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9848g00001 K02971 - gmx:100817753 136.346