Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium983g00003 ATGGTGACTTTAGCCCATGGGAGAAAGGAAGGGCAGGGAAAGAGACTTGGGAAATACGAATTGGGAAGAACACTTGGAGAAGGAAATTTTGGAAAGGTCAAGTTGGCAAGGGACACTAATTCTGGGAAGCTTTTTGCTGTTAAGATCCTTGAGAAGAGCAAGATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAGATATCTACCTTGAAGCTTCTGAAGCACCCTAATGTCGTCAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTACATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTGAAGAAACTGAAGGTAGGAAGATATTCCAACAGTTGATTGATGGTGTGAGTTTCTGCCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCTGGAGAATGTTCTTGTCGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTTAGTGCTTTGCCTCAGCATTTTAGGGATGATGGGTTGCTTCATACTACTTGTGGAAGTCCCAACTATGTTGCTCCTGAGATTCTTGCTAATAAAGGCTATGACGGTGGAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTTACAGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTTTATCAAAAGATTTTTAAAGGAGACCTTCAGATACCAAGATGGCTATCAGCTGGTGCTCGAAACATGATAAAAAGAATGCTTGATCCAAATCCTAAAACCCGGATAACAATGACTATGATCAAAGAAGATGAATGGTTCAAAGAAGGTTATATTCCTTCAAATCCAGAAGATGAAGAAGAGGGTGTGTTCATTGATGATGAAGCCTTTTCCATTCATAATGCGTCACTTGAATCAGATCAAGGTAGTCCAACATCACCAACACTCGTCAATGCATTTCAATTGATAGGGATGTGTTCAAGTCTAGATCTCTCTGGCCTTTTTGAGAAAGAGGATGTTACTGAGAGGAAGATAAGGTTTACATCCACTCATTCACCAAAAGATTTGGAGGAGAGGATAGAAGACATTGTAACAGGGATGAGATGTAGAGTTCAGAAGAAGAATGGGATGTTGAAAGTGACACAAGATATTGAAGCACAGAAATGTCTCGGTAGTCTTTTAATGATAATAGAGGTATTTGAAATCAGTCCAACATTGTATGTAGTAGAGTTGAGCAAGTGTTGTGGAGATGCTTCTGCGTATAGACAGTTATGCCAGAAGTTGTCAAATGAATTGGGTTTTGACCCAAACCAACAGATAGAGAGCTCAGAAATGATTGGCCTACTAAGAGAAAATAATTTGGAAGCTATAAATGTAGATGTGTGA 1386 0.3903 MVTLAHGRKEGQGKRLGKYELGRTLGEGNFGKVKLARDTNSGKLFAVKILEKSKIIDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLEETEGRKIFQQLIDGVSFCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRDDGLLHTTCGSPNYVAPEILANKGYDGGTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDLQIPRWLSAGARNMIKRMLDPNPKTRITMTMIKEDEWFKEGYIPSNPEDEEEGVFIDDEAFSIHNASLESDQGSPTSPTLVNAFQLIGMCSSLDLSGLFEKEDVTERKIRFTSTHSPKDLEERIEDIVTGMRCRVQKKNGMLKVTQDIEAQKCLGSLLMIIEVFEISPTLYVVELSKCCGDASAYRQLCQKLSNELGFDPNQQIESSEMIGLLRENNLEAINVDV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium983g00003 461 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00003 461 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vium983g00003 461 CDD CIPK_C 318 429 - -
Vium983g00003 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vium983g00003 461 FunFam Non-specific serine/threonine protein kinase 312 434 - -
Vium983g00003 461 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vium983g00003 461 Pfam NAF domain 314 373 IPR004041 GO:0007165
Vium983g00003 461 Gene3D Kinase associated domain 1, KA1 316 433 - -
Vium983g00003 461 Gene3D Transferase(Phosphotransferase) domain 1 11 315 - -
Vium983g00003 461 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 421 - -
Vium983g00003 461 FunFam Non-specific serine/threonine protein kinase 12 314 - -
Vium983g00003 461 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00003 461 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Vium983g00003 461 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00003 461 SUPERFAMILY Protein kinase-like (PK-like) 15 315 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium983g00003 Vium-Chr983 919 5804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium983g00003 82 440 CBL-interacting serine-threonine protein kinases AT3G17510 68.698 3.74e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium983g00003 Pkinase 7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium983g00003 K07198 - gmx:100815660 756.903