Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium983g00002 ATGTACACTCCAAAAAAAAAAAAGACTACTTGTTGTGCAACACTACACAACAAAACCATCACGTTGCAACAATTTGTTGTTCAAACAGGAATAGCCGTTTACTATTCTTCGCACACAGCAGAAGAAGCAGGTTCAGGGAGAGAAGGGTCGTGCAGAGGAACACGTTTGGGCAAGAGGGTGTTGAGAGAAAGGTGTTTCTCAGTGATGGTGACTTTAGCCCATGGGAGAAAGGAAGGGCAGGGAAAGAGACTTGGGAAATACGAATTGGGAAGAACACTTGGAGAAGGAAATTTTGGAAAGGTCAAGTTGGCAAGGGACACTAATTCTGGGAAGCTTTTTGCTGTTAAGATCCTTGAGAAGAGCAAGATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAGATATCTACCTTGAAGCTTCTGAAGCACCCTAATGTCGTCAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTACATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTGAAGAAACTGAAGGTAGGAAGATATTCCAACAGTTGATTGATGGTGTGAGTTTCTGCCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCTGGAGAATGTTCTTGTCGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTTAGTGCTTTGCCTCAGCATTTTAGGGATGATGGGTTGCTTCATACTACTTGTGGAAGTCCCAACTATGTTGCTCCTGAGATTCTTGCTAATAAAGGCTATGACGGTGGAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTTACAGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTTTATCAAAAGATACCAAGATGGCTATCAGCTGGTGCTCGAAACATGATAAAAAGAATGCTTGATCCAAATCCTAAAACCCGGATAACAATGACTATGATCAAAGAAGATGAATGGTTCAAAGAAGGTTATATTCCTTCAAATCCAGAAGATGAAGAAGAGGGTGTGTTCATTGATGATGAAGCCTTTTCCATTCATAATGCGTCACTTGAATCAGATCAAGGTAGTCCAACATCACCAACACTCGTCAATGCATTTCAATTGATAGGGATGTGTTCAAGTCTAGATCTCTCTGGCCTTTTTGAGAAAGAGGATGTTACTGAGAGGAAGATAAGGTTTACATCCACTCATTCACCAAAAGATTTGGAGGAGAGGATAGAAGACATTGTAACAGGGATGAGATGTAGAGTTCAGAAGAAGAATGGGATGTTGAAAGTGACACAAGATATTGAAGCACAGAAATGTCTCGGTAGTCTTTTAATGATAATAGAGGTATTTGAAATCAGTCCAACATTGTATGTAGTAGAGTTGAGCAAGTGTTGTGGAGATGCTTCTGCGTATAGACAGTTATGCCAGAAGTTGTCAAATGAATTGGGTTTTGACCCAAACCAACAGATAGAGAGCTCAGAAATGATTGGCCTACTAAGAGAAAATAATTTGGAAGCTATAAATGTAGATGTGTGA 1569 0.3964 MYTPKKKKTTCCATLHNKTITLQQFVVQTGIAVYYSSHTAEEAGSGREGSCRGTRLGKRVLRERCFSVMVTLAHGRKEGQGKRLGKYELGRTLGEGNFGKVKLARDTNSGKLFAVKILEKSKIIDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLEETEGRKIFQQLIDGVSFCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRDDGLLHTTCGSPNYVAPEILANKGYDGGTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIPRWLSAGARNMIKRMLDPNPKTRITMTMIKEDEWFKEGYIPSNPEDEEEGVFIDDEAFSIHNASLESDQGSPTSPTLVNAFQLIGMCSSLDLSGLFEKEDVTERKIRFTSTHSPKDLEERIEDIVTGMRCRVQKKNGMLKVTQDIEAQKCLGSLLMIIEVFEISPTLYVVELSKCCGDASAYRQLCQKLSNELGFDPNQQIESSEMIGLLRENNLEAINVDV 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium983g00002 522 FunFam Non-specific serine/threonine protein kinase 373 495 - -
Vium983g00002 522 CDD CIPK_C 379 490 - -
Vium983g00002 522 Pfam Protein kinase domain 87 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00002 522 FunFam Non-specific serine/threonine protein kinase 78 166 - -
Vium983g00002 522 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vium983g00002 522 FunFam Non-specific serine/threonine protein kinase 80 375 - -
Vium983g00002 522 Pfam NAF domain 375 434 IPR004041 GO:0007165
Vium983g00002 522 ProSiteProfiles NAF domain profile. 373 397 IPR018451 GO:0007165
Vium983g00002 522 Gene3D Kinase associated domain 1, KA1 377 494 - -
Vium983g00002 522 ProSiteProfiles Protein kinase domain profile. 87 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00002 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium983g00002 522 SMART serkin_6 87 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00002 522 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 82 482 - -
Vium983g00002 522 SUPERFAMILY Protein kinase-like (PK-like) 83 376 IPR011009 -
Vium983g00002 522 Gene3D Transferase(Phosphotransferase) domain 1 79 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium983g00002 Vium-Chr983 734 5804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium983g00002 150 501 CBL-interacting serine-threonine protein kinases AT3G17510 67.590 2.03e-161 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium983g00002 Pkinase 7.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium983g00002 K07198 - gmx:100815660 738.799