Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium983g00001 ATGTACACTCCAAAAAAAAAAAAGACTACTTGTTGTGCAACACTACACAACAAAACCATCACGTTGCAACAATTTGTTGTTCAAACAGGAATAGCCGTTTACTATTCTTCGCACACAGCAGAAGAAGCAGGTTCAGGGAGAGAAGGGTCGTGCAGAGGAACACGTTTGGGCAAGAGGGTGTTGAGAGAAAGGTGTTTCTCAGTGATGGTGACTTTAGCCCATGGGAGAAAGGAAGGGCAGGGAAAGAGACTTGGGAAATACGAATTGGGAAGAACACTTGGAGAAGGAAATTTTGGAAAGGTCAAGTTGGCAAGGGACACTAATTCTGGGAAGCTTTTTGCTGTTAAGATCCTTGAGAAGAGCAAGATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAGATATCTACCTTGAAGCTTCTGAAGCACCCTAATGTCGTCAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTACATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTGAAGAAACTGAAGGTAGGAAGATATTCCAACAGTTGATTGATGGTGTGAGTTTCTGCCACAATAAAGGTGTCTTCCACAGGGATCTTAAGCTGGAGAATGTTCTTGTCGATGCCAAAGGGAACATAAAGATAACTGATTTTAACCTTAGTGCTTTGCCTCAGCATTTTAGGGATGATGGGTTGCTTCATACTACTTGTGGAAGTCCCAACTATGTTGCTCCTGAGATTCTTGCTAATAAAGGCTATGACGGTGGAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTTACAGGATATCTTCCTTTTGATGACAGAAATCTTGCAGTTCTTTATCAAAAGATTTTTAAAGGAGACCTTCAGATACCAAGATGGCTATCAGCTGGTGCTCGAAACATGATAAAAAGAATGCTTGATCCAAATCCTAAAACCCGGATAACAATGACTATGATCAAAGAAGATGAATGGTTCAAAGAAGGTTATATTCCTTCAAATCCAGAAGATGAAGAAGAGGGTGTGTTCATTGATGATGAAGCCTTTTCCATTCATAATGCGTCACTTGAATCAGATCAAGGTAGTCCAACATCACCAACACTCGTCAATGCATTTCAATTGATAGGGATGTGTTCAAGTCTAGATCTCTCTGGCCTTTTTGAGAAAGAGGATGTTACTGAGAGGAAGATAAGGTTTACATCCACTCATTCACCAAAAGATTTGGAGGAGAGGATAGAAGACATTGTAACAGGGATGAGATGTAGAGTTCAGAAGAAGAATGGGATGTTGAAAGTGACACAAGATATTGAAGCACAGAAATGTCTCGGTAGTCTTTTAATGATAATAGAGGTATTTGAAATCAGTCCAACATTGTATGTAGTAGAGTTGAGCAAGTGTTGTGGAGATGCTTCTGCGTATAGACAGTTATGCCAGAAGTTGTCAAATGAATTGGGTTTTGACCCAAACCAACAGATAGAGAGCTCAGAAATGATTGGCCTACTAAGAGAAAATAATTTGGAAGCTATAAATGTAGATGTGTGA 1590 0.3956 MYTPKKKKTTCCATLHNKTITLQQFVVQTGIAVYYSSHTAEEAGSGREGSCRGTRLGKRVLRERCFSVMVTLAHGRKEGQGKRLGKYELGRTLGEGNFGKVKLARDTNSGKLFAVKILEKSKIIDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLEETEGRKIFQQLIDGVSFCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRDDGLLHTTCGSPNYVAPEILANKGYDGGTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDLQIPRWLSAGARNMIKRMLDPNPKTRITMTMIKEDEWFKEGYIPSNPEDEEEGVFIDDEAFSIHNASLESDQGSPTSPTLVNAFQLIGMCSSLDLSGLFEKEDVTERKIRFTSTHSPKDLEERIEDIVTGMRCRVQKKNGMLKVTQDIEAQKCLGSLLMIIEVFEISPTLYVVELSKCCGDASAYRQLCQKLSNELGFDPNQQIESSEMIGLLRENNLEAINVDV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium983g00001 529 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vium983g00001 529 FunFam Non-specific serine/threonine protein kinase 78 166 - -
Vium983g00001 529 Pfam Protein kinase domain 87 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00001 529 ProSiteProfiles NAF domain profile. 380 404 IPR018451 GO:0007165
Vium983g00001 529 CDD CIPK_C 386 497 - -
Vium983g00001 529 FunFam Non-specific serine/threonine protein kinase 80 382 - -
Vium983g00001 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium983g00001 529 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 82 489 - -
Vium983g00001 529 Gene3D Transferase(Phosphotransferase) domain 1 79 383 - -
Vium983g00001 529 Pfam NAF domain 382 441 IPR004041 GO:0007165
Vium983g00001 529 ProSiteProfiles Protein kinase domain profile. 87 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00001 529 SMART serkin_6 87 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium983g00001 529 FunFam Non-specific serine/threonine protein kinase 380 502 - -
Vium983g00001 529 Gene3D Kinase associated domain 1, KA1 384 501 - -
Vium983g00001 529 SUPERFAMILY Protein kinase-like (PK-like) 83 383 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium983g00001 Vium-Chr983 734 5804 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium983g00001 150 508 CBL-interacting serine-threonine protein kinases AT3G17510 68.698 2.09e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium983g00001 Pkinase 1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium983g00001 K07198 - gmx:100815660 756.903