Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9831g00001 AATCAGTTGGAGGAGACATTCAGTGAGATTGGACCTGTGCGGCGTTGCTTTATGGTCACACAGAAAGGGTCAGCGCAGCATCGTGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGATGCCAATCGTGCTATTGAGCTGAAGAATGGTATGTCTGTTGAAGGCCGTAAAATTGGAGTGAAGCATGCAATGCCTCGTCCTCCTCGGGAGGAACGAAATTCAAAACCAAATAAAGCTGGAACACCAGATGATCTTGTGAAACCAAAAGGTGATGATGTAAACGACAGCAAATCATCTGGAACAGAGAAGCATGTTTCAGTTTTGAAGGAAGTTTTGAAGGAAGAAGTACAAGTCACAAGTAAACAAAAAAACTCAAAGAACCCAATGGAAACAAAAAAATCAGCTCTTTGTAATGATGTTGCAGATGATGGTGGTTGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGCCTCAAGGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCCATTAACTACCCTCTTTCAAGGAAAGATCTTGAGAAACATGGTCTCATGCAAGATGGCTGTACCATGGATGCCTCGTCTGTACTTTATACAAGTGTAAAATCAGCTCGACTTTCTGTTGCAATGTTGCACAAAAAAGTGATAAGGGGAGAAACAATTTGGGCCCGCCAATTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTTACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCCAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATACGAATGATACTCTTGCTTCAGAGAAAGAAGAAGAAATCTTGAGTGATGAAGATAGTGATGAGGAGGATGTGGAGCTTGTTGATAAAAGATCTGGCCAAGGAGATGATAATGATACAAACCACTCTAGTGCCATGGTGGAAGAGGGAGCTCCTCCTGAAGATAATTTTGATAAGGAGGCAGACGTTGCAAGAAAGGTTCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAGAACAATGATTCTATGTTGTCCAAAGAAAACAAAGAATCAAGACCTGATGAAGTTGTTAAGGATGCTGATGGAAAAGAATCTGATGACTTGGAAAAGGTTTCAGGTGCTTCTAAGCCTGACATTTCCAGCATAAACAAGTTATCTAATCCTAAGGGAACAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTTCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAGCTGCTATTGCTGCTTCCGGGACAGGTATTTTGCTGAAGGGTAGACCGTTGAAAGTTTTAAAGGCTTTGAATAAGAAATCGGCACATGACAAGGAATTGGAGAAAGCAAAAAATGAGGTTAATGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTGGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTCATCTCCAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGATAAGAACGGAAAGGTAGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTTGGTGCTGAACATCGACCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTGCAATTTCAGCAGCAGGCTCCTCAAGATGACAACAATGATATGGAAAATGACAAACCTGGCAAGAAAGAAGATCACAGAGAGGACAGAAAACGAAAGTCTAGAGAGCATGGTGAACCGGCAAAGGAAGCAGTAGTGAATTCAAATGGTGAATCAGGTGATACACTGGCAAATGGAAAATCCAAAAGACAGAAAGGCAACAAAAAGAGCAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATATTCAAAATGGCCAGAAAATTGGTGGTGCATCTGTTGAAGATCAAAACACTGCTGCTTCCACTAACAGAAGAAAATCAGGAAACAAAGATGATGAAACTGGGTTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGGCATAAGGTGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTAATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGGAGAGAAAAAGCCTTCAAAACAGCTTAGGAAATGGTTCCAATCATAG 2778 0.4064 NQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGMSVEGRKIGVKHAMPRPPREERNSKPNKAGTPDDLVKPKGDDVNDSKSSGTEKHVSVLKEVLKEEVQVTSKQKNSKNPMETKKSALCNDVADDGGCSEKQRVARTVIFGGLKDSDMAEEVHSQAREIGTVCSINYPLSRKDLEKHGLMQDGCTMDASSVLYTSVKSARLSVAMLHKKVIRGETIWARQLGGEGSKTQKWKLIVRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDTNDTLASEKEEEILSDEDSDEEDVELVDKRSGQGDDNDTNHSSAMVEEGAPPEDNFDKEADVARKVLNNLLGSSSKGTSENNDSMLSKENKESRPDEVVKDADGKESDDLEKVSGASKPDISSINKLSNPKGTEEDLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAANTAISAAIAASGTGILLKGRPLKVLKALNKKSAHDKELEKAKNEVNDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNDKNGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGAEHRPIVEFALDNVQTLKLRKAKLQFQQQAPQDDNNDMENDKPGKKEDHREDRKRKSREHGEPAKEAVVNSNGESGDTLANGKSKRQKGNKKSKRALKENPEALSMKPKNIQNGQKIGGASVEDQNTAASTNRRKSGNKDDETGFRKRKMQNQEQEAGHKVVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQENGEKKPSKQLRKWFQS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9831g00001 925 CDD RRM1_RBM28_like 2 66 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 336 390 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 452 469 - -
Vium9831g00001 925 SUPERFAMILY RNA-binding domain, RBD 2 236 IPR035979 GO:0003676
Vium9831g00001 925 MobiDBLite consensus disorder prediction 344 358 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 843 870 - -
Vium9831g00001 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 625 738 IPR000504 GO:0003723
Vium9831g00001 925 MobiDBLite consensus disorder prediction 403 418 - -
Vium9831g00001 925 SMART rrm1_1 626 717 IPR000504 GO:0003723
Vium9831g00001 925 SMART rrm1_1 250 323 IPR000504 GO:0003723
Vium9831g00001 925 SMART rrm1_1 474 552 IPR000504 GO:0003723
Vium9831g00001 925 SMART rrm1_1 1 61 IPR000504 GO:0003723
Vium9831g00001 925 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 240 361 - -
Vium9831g00001 925 Gene3D - 1 78 IPR012677 -
Vium9831g00001 925 Gene3D - 406 570 IPR012677 -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 419 449 - -
Vium9831g00001 925 FunFam RNA-binding motif protein 28 624 719 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 56 104 - -
Vium9831g00001 925 CDD RRM4_RBM28_like 625 722 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 877 919 - -
Vium9831g00001 925 Coils Coil 551 578 - -
Vium9831g00001 925 PANTHER RNA-BINDING MOTIF PROTEIN 14B 2 925 - -
Vium9831g00001 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 533 IPR000504 GO:0003723
Vium9831g00001 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 58 IPR000504 GO:0003723
Vium9831g00001 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 320 IPR000504 GO:0003723
Vium9831g00001 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 65 IPR000504 GO:0003723
Vium9831g00001 925 MobiDBLite consensus disorder prediction 744 774 - -
Vium9831g00001 925 SUPERFAMILY RNA-binding domain, RBD 245 329 IPR035979 GO:0003676
Vium9831g00001 925 MobiDBLite consensus disorder prediction 815 842 - -
Vium9831g00001 925 FunFam Putative RNA binding ribonucleoprotein 402 570 - -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 734 925 - -
Vium9831g00001 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 327 IPR000504 GO:0003723
Vium9831g00001 925 MobiDBLite consensus disorder prediction 403 469 - -
Vium9831g00001 925 Gene3D - 624 719 IPR012677 -
Vium9831g00001 925 MobiDBLite consensus disorder prediction 59 104 - -
Vium9831g00001 925 Gene3D - 236 371 IPR012677 -
Vium9831g00001 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 556 IPR000504 GO:0003723
Vium9831g00001 925 SUPERFAMILY RNA-binding domain, RBD 473 703 IPR035979 GO:0003676
Vium9831g00001 925 CDD RRM2_RBM28_like 250 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9831g00001 Vium-Chr9831 10 9858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9831g00001 3 67 Eukaryotic Initiation Factors Gene Family AT3G11400 38.462 2.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9831g00001 K14573 - gmx:100794821 1447.95