Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9828g00003 ATGGATGAGCAACACGAAAGTCAACCTTCTTCAACCAAAGTCGACAGAAAGATTGTAGAGAAAAACAGGCGAAGCCAAATGAAGAATCTTTATTCTGAACTCAACTCTCTTCTCCCTAGTTATAACCCCAACCAAGTGGTGGCAGTGCCTGATCAAATAGATGAGGCGACGGAGTACATCAAAAGGCTGGAGGAAAAAGTGAAGACGGCGAAGGAGAAGAAAGAAAGGCTAATGGAAAGTAAGAGAAGTGGAAGTGGTTTATCGAGTGGTTTTGAAACAAGAGGAAGCGAAAAGCCGCCAAAAATGGAGATTCATGTAAAGGGTTCTGTGCTTCAAGTCATTCTAACATGTGGGGTCGATAACCACTTTGTTTTCTGTGAAATTATCAGAATATTGCGTGAAGAGAATGTTGAGGTAATCACTACCAGTTATACAATTGTTGGAGATTCAGTGATTCATGTCGTGCACGGGGAGGTTGGGCAATCTATGATCCATTCTGGAGCTAGCAAAGTGAGTGAGAAGCTGAAATGGTTCCTAAACGGATCCATCTCTAATGTAGAAATGGAGCCTGGAACCTTATGGGGTTCTGAAATTGGAGCTACTCTTCCATGGGTTCTTCTAGATCCTACCCCACACAATGCCTTACAACCAAATCCTTAG 660 0.4273 MDEQHESQPSSTKVDRKIVEKNRRSQMKNLYSELNSLLPSYNPNQVVAVPDQIDEATEYIKRLEEKVKTAKEKKERLMESKRSGSGLSSGFETRGSEKPPKMEIHVKGSVLQVILTCGVDNHFVFCEIIRILREENVEVITTSYTIVGDSVIHVVHGEVGQSMIHSGASKVSEKLKWFLNGSISNVEMEPGTLWGSEIGATLPWVLLDPTPHNALQPNP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9828g00003 219 MobiDBLite consensus disorder prediction 70 99 - -
Vium9828g00003 219 SMART finulus 17 69 IPR011598 GO:0046983
Vium9828g00003 219 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Vium9828g00003 219 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 176 - -
Vium9828g00003 219 MobiDBLite consensus disorder prediction 1 22 - -
Vium9828g00003 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Vium9828g00003 219 Coils Coil 53 80 - -
Vium9828g00003 219 Gene3D - 2 87 IPR036638 GO:0046983
Vium9828g00003 219 FunFam Transcription factor bHLH162 5 89 - -
Vium9828g00003 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 80 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9828g00003 Vium-Chr9828 43217 44062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9828g00003 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.624 6.81e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9828g00003 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9828g00003 - - gmx:100784042 272.322