Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9828g00002 ATGGATGAGCAACACGAAAGTCAACCTTCTTCAACCAAAGTCGACAGAAAGATTGTAGAGAAAAACAGGCGAAGCCAAATGAAGAATCTTTATTCTGAACTCAACTCTCTTCTCCCTAGTTATAACCCCAACTTTTTTGATGAATTAACTCAGCAAGTGGTGGCAGTGCCTGATCAAATAGATGAGGCGACGGAGTACATCAAAAGGCTGGAGGAAAAAGTGAAGAAGGCGAAGGAGAAGAAAGAAAGGATAATGGAAAGTAAGAGAAGTGGAAGTGGTTTATCGAGTGGTTTTGAAACAAGAGGAAGCGAAAAGCCGCCAAAAATGGAGATTCATGTAAAGGGTTCTGTGCTTCAAGTCATTCTAACATGTGGGGTCGATAACCACTTTGTTTTCTGTGAAATTATCAGAATATTGCGTGAAGAGAATGTTGAGGTAATCACTACCAGTTATACAATTGTTGGAGATTCAGTGATTCATGTCGTGCACGGGGAGGTTGGGCAATCTATGATCCATTCTGGAGCTAGCAAAGTGAGTGAGAAGCTGAAATGGTTCCTAAACGGATCCATCTCTAATGTAGAAATGGAGCCTGGAACCTTATGGGGTTCTGAAATTGGAGCTACTCTTCCATGGGTTCTTCTAGATCCTACCCCACACAATGCCTTACAACCAAATCCTTAG 681 0.4185 MDEQHESQPSSTKVDRKIVEKNRRSQMKNLYSELNSLLPSYNPNFFDELTQQVVAVPDQIDEATEYIKRLEEKVKKAKEKKERIMESKRSGSGLSSGFETRGSEKPPKMEIHVKGSVLQVILTCGVDNHFVFCEIIRILREENVEVITTSYTIVGDSVIHVVHGEVGQSMIHSGASKVSEKLKWFLNGSISNVEMEPGTLWGSEIGATLPWVLLDPTPHNALQPNP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9828g00002 226 MobiDBLite consensus disorder prediction 1 21 - -
Vium9828g00002 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 86 IPR036638 GO:0046983
Vium9828g00002 226 Pfam Helix-loop-helix DNA-binding domain 15 43 IPR011598 GO:0046983
Vium9828g00002 226 Gene3D - 2 94 IPR036638 GO:0046983
Vium9828g00002 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 70 IPR011598 GO:0046983
Vium9828g00002 226 MobiDBLite consensus disorder prediction 78 106 - -
Vium9828g00002 226 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 183 - -
Vium9828g00002 226 Coils Coil 60 90 - -
Vium9828g00002 226 SMART finulus 17 76 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9828g00002 Vium-Chr9828 39858 40700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9828g00002 1 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.245 1.02e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9828g00002 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9828g00002 - - gmx:100784042 258.07