Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9826g00004 ATGAGTAACAGTGATTGGGTGTTGGATTATGATTATCTAGACAGCATTTCTTTCCCCACTCTACACCCACCCAAATTCTCTTGGTCTTCTTCCTCTCCTCCTCCCACCTTCAGTGCGGACGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGTCTGAGGTCACCTAGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTGTCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTAAGTGATGCAGTTCGAATGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAGTCCATTAAGAATCTACAAGGGAAAATCAATGAACTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAGCAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAAGTCACAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 648 0.4614 MSNSDWVLDYDYLDSISFPTLHPPKFSWSSSSPPPTFSADVDDPLGISDGFKENGSKKRLRSPSSKACKEKMRRDRLNDRFLELGSVLDPARPLKMEKAVILSDAVRMVSQLREEAQKLRESIKNLQGKINELKAEKNELREEKQQLKAEKDNLEQKIEAFKSQPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9826g00004 215 SMART finulus 67 118 IPR011598 GO:0046983
Vium9826g00004 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 132 IPR036638 GO:0046983
Vium9826g00004 215 PANTHER BHLH TRANSCRIPTION FACTOR 4 215 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vium9826g00004 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Vium9826g00004 215 Gene3D - 52 110 IPR036638 GO:0046983
Vium9826g00004 215 CDD bHLH_AtILR3_like 66 141 - -
Vium9826g00004 215 Gene3D arf6 gtpase in complex with a specific effector, jip4 111 164 - -
Vium9826g00004 215 MobiDBLite consensus disorder prediction 24 72 - -
Vium9826g00004 215 MobiDBLite consensus disorder prediction 52 72 - -
Vium9826g00004 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Vium9826g00004 215 Coils Coil 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9826g00004 Vium-Chr9826 11914 14769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9826g00004 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.522 5.51e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium9826g00004 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9826g00004 - - ccaj:109814067 332.798