Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium981g00002 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAGTATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATAATTTGAGTAGCATTGAGAATGAAAGCTCTTCTGCCACTCATCTTCCACCTTTGGTTCTTGTTCATCCTTTCCCTGGGGGCCTTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGCGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTCACCACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGATCCCAATCATTCTAATATGGTTGACACTGATTACTCTGAACTGCAAATAAAGATTACGGAGGCATTATCATCTTCAAGTTTGCAAGAGACTTTGCCTGAACCTGAAAATTGCTAA 570 0.4018 MDENKKWMHKETERQRRQEMGKLCNNLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDALLKVSNNLSSIENESSSATHLPPLVLVHPFPGGLEIICSHSFRKSAFPMSRLLDILHKEGLNVVTTTSIRRDGRFIHTIQSEDPNHSNMVDTDYSELQIKITEALSSSSLQETLPEPENC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium981g00002 189 Gene3D - 1 86 IPR036638 GO:0046983
Vium981g00002 189 FunFam Transcription factor bHLH126 1 84 - -
Vium981g00002 189 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Vium981g00002 189 SMART finulus 10 62 IPR011598 GO:0046983
Vium981g00002 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Vium981g00002 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 167 - -
Vium981g00002 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Vium981g00002 189 Coils Coil 46 83 - -
Vium981g00002 189 CDD bHLH_AtORG2_like 5 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium981g00002 Vium-Chr981 43397 44996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium981g00002 5 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 40.397 7.14e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium981g00002 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium981g00002 - - pvu:PHAVU_004G124200g 298.516