Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium981g00001 ATGGACAAATTTAAATCTGGTTTGAACAGATTTGAAAATCTGCAGATTGCAGTGAAGCGATTGAAGACAATGACTGCGAAAGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATCTGTTGGGGTTGAGAGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCCAAGGAATGTCAGTTAGATTGGGCGAGAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGTTTATTGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAAGCGAGCAATGTTCTTCTGGATTCTGAATTCCAATCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATATGACTACAAAGGTTAAAGGCACACTAGGATATCTGGCACCAGAATATGCTATGTGGGGAAAAGTTTCTGAGAGTTGTGATGTTTACAGCTTTGGAATTTTACTGTTGGAGATCATCAGTGCGAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATTTGTCAACAAAGGTCTCTTCGGCAATATCGCAGATCCAAAACTGAAGGGGAGATTTGATTTGCAGCAGTTGAAAAATGTGACCACAATAGCTCTTAGATGCACTGATACTAGCGCAGATAAGAGGCCTAACATGAAAGAGGTCGTCAATTGGCTCAAGAATGGTGTAGGGAGCACTTAA 810 0.4148 MDKFKSGLNRFENLQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWARRMSIAIGAAEGLLYLHHESTPHIIHRDIKASNVLLDSEFQSKVADFGFAKLVPDGVTHMTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPFVNKGLFGNIADPKLKGRFDLQQLKNVTTIALRCTDTSADKRPNMKEVVNWLKNGVGST 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium981g00001 269 Gene3D Phosphorylase Kinase; domain 1 4 67 - -
Vium981g00001 269 FunFam PTI1-like tyrosine-protein kinase At3g15890 67 269 - -
Vium981g00001 269 PIRSF ILK 2 266 - -
Vium981g00001 269 Gene3D Transferase(Phosphotransferase) domain 1 68 266 - -
Vium981g00001 269 SMART serkin_6 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium981g00001 269 SUPERFAMILY Protein kinase-like (PK-like) 8 264 IPR011009 -
Vium981g00001 269 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 264 - -
Vium981g00001 269 Pfam Protein tyrosine and serine/threonine kinase 11 260 IPR001245 GO:0004672|GO:0006468
Vium981g00001 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 113 125 IPR008271 GO:0004672|GO:0006468
Vium981g00001 269 CDD STKc_IRAK 13 259 - -
Vium981g00001 269 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium981g00001 Vium-Chr981 35657 36637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium981g00001 16 262 Trihelix Transcription Factor Family AT1G70460 44.223 1.31e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vium981g00001 PK_Tyr_Ser-Thr 4.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium981g00001 - - vum:124824452 545.428