Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9812g00009 ATGCCAATCACAATGCCTCTCACTCTAAGGAATAAGCTCAAGACTCTTTGTTCTTCTGTAGATGCTTGGTCTTATGCTATTTTCTGGCGCTTTCATCCACGCAATTCCTTGTTGTTGACTGTTGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAGATCGCCGACATGCATCCACAGGTCCACTTGCTGGGTGAAGGAATTGTAGGTGAAGCTGCTTTCACGGGTAAACACAGTTGGGTGCACTCAGATGGTCAAACTCATTATTGGAATCCGACTGGGCAAAATATTTGTGAAGATGATTCTTGTTTGCATCAACAGTTTTCCTCCGGGATAAAGACTATTGTGGTCATACCTGTCAAAGCATTAGGAGTGATACAGTTTGGATCCAGAAATAAGATTTTGGAGAGAGTGGAATTTTTAGAGCAAACACAAAGCATGCTCACAGAAATAGATGATGATATGGGTATGTTTGACATGTCAGAAAATGCAGTTTTACCACTGGACTGTGAAAATAATGATTTAAATGGGATGTTGGCTTCCATTTCTTCTGCTAGTCCCAACGACCCTTTCCCTTCTCATTATAAAAACTATGAAGAAGCAATGGCTTCATTTCAAGGAGATTCTTCGTATCTTGGTGACCAATTGAAAGGTACCACGGAAGCACAAGTTGTATGGTCAGACAGGAATAGCATTGATGTGCTTTTGAAGCATAACTCTTCTACTGACAACTTCATTGCCAAAACCCCCTATCTTGGTGTGTGTGATGGTGAATTATCTTCTTTTGATTTGTTGGAGCAACTACTGGTTTCCAGTGTAAGGCCACAAGATGTTGCTGATGCGTGTTTTATGAAAGGAAATGCATCTTCTACCAGCAAACTTCCAGTTCAAGATTCGGCACAGGTCCCATTCTGCAGTATGGACAGAGGGTCATTTCAAGGAAAATTGCAAAATTCACTGGATAACCAATATTCAAATCAGTCTAGTGTTGTGACAGACGTTGATTTTTCTTATACTTCATATGCATTGCATGGACACTCTGAGAGCATAGAGCCAGTTGATATGTCAGAAGAAATTTTGAAGTTCAGCTCCATGGATGATCTTTGCCACTGGTTTGGTCCTTCTTCAGAGGATAGCATCTGCAAAGCGGTAATTGCAATGGATAACAAATTTTCTGAATCAACGGAATTTAATCCCACTTCCTTTGATCTGGCTGGAAGTAGTTCTTTAAATGATGTTTTAGTGACAGGCCTAGCTGGGTATAATTCAAACTCAGATGGGAATGAAACATCTGTGGTTATGCAGAACACTGAAAAAGGTCCGCTGGATTTCATGGAAATTGATTTTAGCTATGAACAAACCAATGAATGGTGGGGGAATACACTTACACCAGTGGTGAGTGGTGTTACTGATACTGGCTTTTCTGAAAGCATATCAGAGTTGATTTCTGATACTCTGCCAGGCACCCGGAAGAGATTATTCTCAGAGTTGGGAATTGAAGAGCTTTTGAGGGGTGGAGCAAATTACTATCCAGTCAATAGTTCGGAATTTGAGTGTGGATTATCACCCAATAAGAGGCAGACAGTAGAATCTTCATCTGTGAATGGAAGTACAAGAGCAGAACTGATGCAACCTCTTTGTGACTTAGACAGCACAAACAATCTTCCAAGCAAGAAAGATACATTCTCAAAATTACAAGCAGCAACTTGGATTGGTGATAGCCATAGCATTAACATTAGAAAGGCTGTTCCAAAACACCCTCAAAAGGCAGAGGAACACGCAAAGCCCACCAAGAAGAGGGCTAGACCAGGAGAGAGCCCTCGACCACGGCCAAAAGATCGTCAGCAAATCCAAGACTGCATTAAAGAATTGAGAGGAATCATCCCAAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCTCACCATCAGATATATGCTTTTCTTACAAAGTGTTCTCAAGTATTCAGACAAGTTACGAGAACCAAATGAGCCGAAGCTTATAGAACAGGAAAATGAAGTGGTTCTAAAAGACAGTGGTGTCGCGGATAGCAAAAACTGTGGCATTACATGGGCATATGAAGTGGGACACGAAACAATGCTATGCCCCATTATAGTTGAAGACATGAGTCCACCGGGCCAAATGCTTATAGAGATGCTTTGTGAGGTGCAGGGTATATTCCTTGAGATCATTGACATAATTCGGGGTTTTGGACTGAATATATTGAAAGCCAAGATGGAAAGAAAGAAGAACAAACTATGGGCACGCTTTATTGTTGAGGCAAACAGACATGTGACAAGGATAGATGTGTTTTGGTCCCTTATCCATCTTCTACAACAGACAAACACCTCCGGCATTGATTCTTCCAACAAGAATTGGGATGCTCTTCATGCCAATAGCATCAAATCGTAG 2415 0.4124 MPITMPLTLRNKLKTLCSSVDAWSYAIFWRFHPRNSLLLTVEEAYYEEHLGEEIADMHPQVHLLGEGIVGEAAFTGKHSWVHSDGQTHYWNPTGQNICEDDSCLHQQFSSGIKTIVVIPVKALGVIQFGSRNKILERVEFLEQTQSMLTEIDDDMGMFDMSENAVLPLDCENNDLNGMLASISSASPNDPFPSHYKNYEEAMASFQGDSSYLGDQLKGTTEAQVVWSDRNSIDVLLKHNSSTDNFIAKTPYLGVCDGELSSFDLLEQLLVSSVRPQDVADACFMKGNASSTSKLPVQDSAQVPFCSMDRGSFQGKLQNSLDNQYSNQSSVVTDVDFSYTSYALHGHSESIEPVDMSEEILKFSSMDDLCHWFGPSSEDSICKAVIAMDNKFSESTEFNPTSFDLAGSSSLNDVLVTGLAGYNSNSDGNETSVVMQNTEKGPLDFMEIDFSYEQTNEWWGNTLTPVVSGVTDTGFSESISELISDTLPGTRKRLFSELGIEELLRGGANYYPVNSSEFECGLSPNKRQTVESSSVNGSTRAELMQPLCDLDSTNNLPSKKDTFSKLQAATWIGDSHSINIRKAVPKHPQKAEEHAKPTKKRARPGESPRPRPKDRQQIQDCIKELRGIIPNGGKCSIDSLLDLTIRYMLFLQSVLKYSDKLREPNEPKLIEQENEVVLKDSGVADSKNCGITWAYEVGHETMLCPIIVEDMSPPGQMLIEMLCEVQGIFLEIIDIIRGFGLNILKAKMERKKNKLWARFIVEANRHVTRIDVFWSLIHLLQQTNTSGIDSSNKNWDALHANSIKS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9812g00009 804 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 5 793 IPR043561 GO:0003700|GO:0006355
Vium9812g00009 804 MobiDBLite consensus disorder prediction 584 616 - -
Vium9812g00009 804 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 601 650 IPR011598 GO:0046983
Vium9812g00009 804 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 56 147 IPR025610 -
Vium9812g00009 804 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 48 IPR025610 -
Vium9812g00009 804 MobiDBLite consensus disorder prediction 583 616 - -
Vium9812g00009 804 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 614 664 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9812g00009 Vium-Chr9812 80139 84854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9812g00009 566 789 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.885 6.25e-66 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9812g00009 - - vun:114190585 1434.08