Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9812g00003 ATGGGGAGCAGAAGCTACTCCGCCAATCCCGCCGATTACAAGCTTCTAGAAGAAGTTGGTTACGGTGCCAGCGCCACCGTCTACCGGGCAATCTACCTTCCCTACAACGAGGAGGTCGCCGTCAAGTGTCTGGATCTGGATCGATGCAACAGCAATCTCGACGACATAAGGAGGGAGGCGCAGACCATGAGCCTCATCGAGCATCCCAACGTGGTCAGGGCCTTCTGCTCCTTCGTCGTAGACCGCAGTCTGTGGGTGGTCATGGGATTCATGGCGCAGGGCTCTTGCTTGCACCTCATGAAGGCGGCCTATCCAGAAGGATTCGAAGAGGCAGCCATCGGATCTATCCTCAAGGAGACTCTCAAGGCGCTCGAGTACCTCCACCGACATGGACACATTCACCGCGATGTTAAGGCCGGGAATATTCTTCTCGATTCCAACGGCCAGGTCAAGCTCGCCGACTTTGGAGTTTCCGCTTGCATGTTCGACACCGGCGACCGCCAGCGTTCCCGGAATACCTTCGTCGGAACTCCCTGCTGGATGGCGCCGGAGGTGCTGCAGCCTGGAACTGGTTATAATTTCAAAGCGGATATTTGGTCTTTTGGAATCACGGCGTTGGAGTTGGCTCATGGTCACGCACCTTTCTCCAAGTATCCTCCCATGAAGGTTCTTTTGATGACAATTCAGAATGCTCCTCCGGGGCTTGATTATGATCGTGACAGAAAGTTCTCCAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCATCCGTGGAGAAGTTGCTCAAACACTCCTTCTTCAGACAAGCTAAGCCTCCGGAGCTTTCTGTCAAGAAATTATTTGCTGATTTACCACCTCTGTGGAACCGTGTCAAATCCCTCCAGCTTAAAGATGCAGCTCAGCTAGCACTGAAGAAAATGCCTTCTGCAGAACAAGAAGCTATATCTCAAAGCGAATATCATCGGGGAGTTAGTGCATGGAACTTCGATATTGATGATTTGAAAGCTCAAGCTGCATTGATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAATTCTTTAGCTCTTACAAGGGTATAAGTGATTTCCAGTTTTCTATGGACAAAAAGAATTCAAATAACTTGCAACAAGATGAGTTTGCAGTACAAGTAGGTAGTAACGACATACCACCGAGTGAGAAGAGAAATGGATCAGTGGCTGAAGCAACATCTTCTACTCTAGAGAATGATATCGGAACAAGCAAGATTAAATCACAATCAGTGAAACTTGGTAAAACCCAAAGTGGACCCCTGGTGCCAGGATCAGTGCTTGGTCATTCTTTATCTGAAAAAGGGCGTGCATTTGAAAGGTTTGAGAATGAAAATCAGTTGTCAGGTGAGAAAAGTAATCGTGATATTCGACGAGCTCCAAGCTTTAGTGGTCCATTGATGCTTCCAAACCGAGCTTCAGCAAATAGTTTATCAGCACCAATAAAATCTTCTGGAGGATTCAGAGATTCCTTGGATGATAAGTCTAATAAGGCTAATCTAGTGCAAATTAAAGGACGGTTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGGATATTCCTGTAAGTTCAGTTTCTCGCCGATCGTCACAGGGGTCTCCAATGAGGAAATCTGCCAGTGTTGGTGATTGGATGGTGGATTACAAACAAATGCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAATATTCCTGGATCATTTCTAGTGCCTCATCTTCATAATCTTCTCCAGCAGACATCTATTCAACAGGATCTTATAATGAATATGTTGAATGGCTTGCAATCCGCAGAGGCAATTGATGCTTCTCAGAATGGAAAATTGCCACCATTGCCTCGCAATTCAGAAAACAATGGAAGTGTTGATACAGCAGTTTCAGAGAGGGAACAGGTGCTGCTAGCCAAAATTTCAGAACTTCAATCTCGGATGATTAATTTGACTGACGAACTAACTTATGAGAAGTTAAGATACGTGCAGTTACAACAACAGCTAGCTGCTGTCTACAGCCAAGAACAAAATGGGGAAAGAGAGGAATATGCATGA 2112 0.4569 MGSRSYSANPADYKLLEEVGYGASATVYRAIYLPYNEEVAVKCLDLDRCNSNLDDIRREAQTMSLIEHPNVVRAFCSFVVDRSLWVVMGFMAQGSCLHLMKAAYPEGFEEAAIGSILKETLKALEYLHRHGHIHRDVKAGNILLDSNGQVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSKSFKEMVAMCLVKDQTKRPSVEKLLKHSFFRQAKPPELSVKKLFADLPPLWNRVKSLQLKDAAQLALKKMPSAEQEAISQSEYHRGVSAWNFDIDDLKAQAALMQDDDDIAEMREEDENKFFSSYKGISDFQFSMDKKNSNNLQQDEFAVQVGSNDIPPSEKRNGSVAEATSSTLENDIGTSKIKSQSVKLGKTQSGPLVPGSVLGHSLSEKGRAFERFENENQLSGEKSNRDIRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSLDDKSNKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQGSPMRKSASVGDWMVDYKQMPIGQSSNDSANINIPGSFLVPHLHNLLQQTSIQQDLIMNMLNGLQSAEAIDASQNGKLPPLPRNSENNGSVDTAVSEREQVLLAKISELQSRMINLTDELTYEKLRYVQLQQQLAAVYSQEQNGEREEYA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9812g00003 703 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Vium9812g00003 703 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 94 324 - -
Vium9812g00003 703 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9812g00003 703 SUPERFAMILY Protein kinase-like (PK-like) 12 327 IPR011009 -
Vium9812g00003 703 Gene3D Phosphorylase Kinase; domain 1 3 89 - -
Vium9812g00003 703 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 4 677 IPR047173 GO:0043539
Vium9812g00003 703 MobiDBLite consensus disorder prediction 397 425 - -
Vium9812g00003 703 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9812g00003 703 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Vium9812g00003 703 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9812g00003 703 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vium9812g00003 703 CDD STKc_OSR1_SPAK 12 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9812g00003 Vium-Chr9812 44550 52728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9812g00003 6 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.332 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vium9812g00003 Pkinase 1.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9812g00003 - - gmx:100783699 1296.57