Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00012 ATGACGTTATCAATTCCTTCCATGGAACTTGTCTCATCGACTTCCAAACTCCCACGGATGTACGACGTTCTCATCAACTTCACCGGAGAAGATATCCGTAGGAAATTTGTTTCTCATCTCGATTATGTCCTCTCTTCTGTTGGATTAACTACTTTCCTTCAGCACGACAATGCAGTGCAGCCAAAACACATCCAAGAGCCTATTCTGAATCTTTGTCGGGTAGCAATTGTTGTTTTTACCGAAACCTATTCTCAATCTGCTTGCTGTCTTCATCAGCTCCAACAAATCATTGAATGGCACGAAACTTACGGCCGACATGTTTTGCCCGTATATTACGAAATTCAGCCATCCGATGTACGTCTCCAGAAGGGTGACTTTGGGAAAGCCTTCAGAGAAACTGCACATCAAACATTTTCAGCACAAGAACTGGAGCATGGCATGTTCAGGTGGAGTCACGCAATCACAAAAGCTGCAAATTTCTTTGGATGGGATGATTGCAATTACAGGAGTGATGCTGAACTAGTGGACACAATTGTTAAGAGCATTATTAATTTACCAGTCTTGTCTGCTACAAAATTTCCAGTTGAATTACATTCTCTCGCGGAAGAAGTGATTCAAATTATAAAAGATAAATCAACGGGACTTTGTAGGATAGGGATATGTGGAATGGGAGGATCGGGTAAAACCACCCTTGCCAAAGCCATCTACAGTCAAATTCATGGTACATTTGTGGAGAAAAGTTTTATTGAAGATATTTTAGAAGTTAGTCGGACGAGAGGGGATGTACATTTACAACGACAGCTTCTTTCAGATGTCCTGAAAACAAAGGTAGAGATACATAACGTTGAAATGGGAAGAAGTATGATTCTGGAAAGACTTTATCGGAAAAGGGTGCTCATTGTACTTGACGATGTGAATGAACATTGTCCATTAGACCTATGGGAAAGTAGGGCATGGTTCGGTGAAGGAACAGTAATAATCATTACAACAAGAGATGAAAGGCTGCTAAGGAAACATGAAGTTCGTTCAGTTTATCGGATAGATCCAATGAATGAAAACAAGTCCCTTGAACTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGCAGAATACATTGACCTTGCAAAAAGAGTAGTTTCTAGATGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTAGTTTATTTGAAAGGACGAAAGAAGAATGGAAGAGTGTAGTGTCAAAATTAGACAATATTCCCCCACATGAAGTTCTACAAAAATTGAAAGTAAGCTTCGACAGTTTGCATAATCAAATGGAAAAAGATTTATTCCTTGATGTATGCTGTTTCTTTGTTGGTAAAGGCAAAGCTTATGTTCGGAAGATTCTAAATGGCTGTGGAGTAGACGCTGATAGTGCAATAAGAGTTCTCATAGAACGTAACTTCATCAAAGTTAAAAAGAACAATAAATTTGGAGTGCATCCTCTGCTACGAAAAATGGGAAGAGAAGTTATTCTTGAAATTTCAAGAAAGGAACCTCGAAATAAGAATCGGCTGTGGCTTGATAAGGATATGCATCACGCACTATTAGAGAATACTCTCTTTTCATCAAGGGAGAACAAAATCATTCACAGATGGCCTATGGAAGAGGATTTATTTGAACGTTATCCTCCTTTAGAGATAAGTGGCCCATTAACATTGGTGAAAATCACTAGAGATTCTGAGTTCCATCCTAAGAAACTGAAATGGATCAGTAGGCAAGGGTTTCCTACAGAATACCTACCTAACGAACTTTATCTGCATGATGCTATGGTGATTGATTTAAAATACAATCTTCTTCGATTCTTCTGGATGGAACCTCAGGTTTTTATTAAGCGCCATTTTCTTTTGAAACTTAACTAA 1893 0.3883 MTLSIPSMELVSSTSKLPRMYDVLINFTGEDIRRKFVSHLDYVLSSVGLTTFLQHDNAVQPKHIQEPILNLCRVAIVVFTETYSQSACCLHQLQQIIEWHETYGRHVLPVYYEIQPSDVRLQKGDFGKAFRETAHQTFSAQELEHGMFRWSHAITKAANFFGWDDCNYRSDAELVDTIVKSIINLPVLSATKFPVELHSLAEEVIQIIKDKSTGLCRIGICGMGGSGKTTLAKAIYSQIHGTFVEKSFIEDILEVSRTRGDVHLQRQLLSDVLKTKVEIHNVEMGRSMILERLYRKRVLIVLDDVNEHCPLDLWESRAWFGEGTVIIITTRDERLLRKHEVRSVYRIDPMNENKSLELLSWHAFREAKPKAEYIDLAKRVVSRCGGLPLALEVIGSSLFERTKEEWKSVVSKLDNIPPHEVLQKLKVSFDSLHNQMEKDLFLDVCCFFVGKGKAYVRKILNGCGVDADSAIRVLIERNFIKVKKNNKFGVHPLLRKMGREVILEISRKEPRNKNRLWLDKDMHHALLENTLFSSRENKIIHRWPMEEDLFERYPPLEISGPLTLVKITRDSEFHPKKLKWISRQGFPTEYLPNELYLHDAMVIDLKYNLLRFFWMEPQVFIKRHFLLKLN 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00012 630 SUPERFAMILY "Winged helix" DNA-binding domain 420 526 IPR036390 -
Vium980g00012 630 PRINTS Disease resistance protein signature 384 398 - -
Vium980g00012 630 PRINTS Disease resistance protein signature 217 232 - -
Vium980g00012 630 PRINTS Disease resistance protein signature 292 306 - -
Vium980g00012 630 Gene3D - 350 433 IPR042197 -
Vium980g00012 630 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vium980g00012 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 443 IPR027417 -
Vium980g00012 630 Gene3D - 14 182 IPR035897 -
Vium980g00012 630 SMART till_3 20 160 IPR000157 GO:0007165
Vium980g00012 630 Pfam TIR domain 21 183 IPR000157 GO:0007165
Vium980g00012 630 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Vium980g00012 630 Pfam NB-ARC domain 202 419 IPR002182 GO:0043531
Vium980g00012 630 Gene3D - 183 344 IPR027417 -
Vium980g00012 630 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 610 IPR044974 GO:0006952
Vium980g00012 630 SMART AAA_5 214 357 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium980g00012 Vium-Chr980 80867 83572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium980g00012 21 614 WRKY Transcription Factor Family AT4G12020 25.244 2.30e-47 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium980g00012 - - pvu:PHAVU_010G029000g 833.558