Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00011 ATGGACTTCACATCTTCGCCGTCGTTCTCGAAAGCGAAACACCAACGGATTCACGACGTGTTCATCAACTTCAGGGGAGAAGACACCCGCAGGAAGTTCGTTTCTCATCTCCACTATGCTCTCTCAAACGCTGGAGTCAACACCTTCTTTGACGAGGAGAATCTTGTCAAAGGAATGCAGCTTCAAGAACTCATGCGAGCAGTAGAAGGATCTCAGATAGCGATCGTTGTTTTCTCCCAAACCTACACTGAATCAACTTGGTGCCTTGATGAGCTTGAACAAATCATCAAATGCAACCAAACCCAGGGCCAGAGTGTTCTCCCTGTATTTTACGAGATTGACCCATCCGATGTACGTCATCAGAAAGGTGATTTTGGAAAATCGTTGGAAGAAGCTGCACGCAGAACCTATTCAGGAGAACAACTGGAGCGTGCCTTGTCCCGGTGGAGCCGTGCACTCAACAAAGCTGCAGGTATCTCTGGTTGGGATGTCAAAAATTTCAGGAATGAAGCTGAACTAGTAAGACAAATTGTTGACCGCGTTCAGAAGTTACTGGACTACGAAGTCTTGTCTATTACAGAATACCCTGTTGGACTAGAATCCCGTGCGCAAGACGTGATTGGACTCATTGAAACTCGTTCCACCCAAGTCTGTATGATAGGGATTTGGGGTATGGGGGGATCGGGGAAAACTACCGTTGCAAAAGCTGTCTACAATCAGATTCATCGTAGATTCATGGATAAAAGTTTCATTGAGAATATTAGAGAAACTTGTGAAAATCATGGTAGAGGGTATGTTCCTTTGCAAGAACAGCTTCTTTCAAATGTTCTGAAAACGAAGGTGGAGATACATAGCGTTGGGATGGGGACGACTATGATCGAGAGCAGACTTGATGGAAAAACCGCACTTATTGTACTTGATGATGTGAATGAGTACAACCAATTAAAAGCTGTCTGTGGAAATCGTAAGTGGATTGGTCAAGGAAGTGTAATAATCATTACAACTAGAGATGTTGGTCTCCTTACTAGACTTGATGTTGATTATATTTATGGGATGGATAAAATGGATGAAGACGAGTCGCTTCAGCTTTTCAGTTTTCATTGTTTTGGAGATGCAAAACCAAAAGAAGACTTCAGTGAGCTTTCAAGAAACGTTGTTGCTTATTGTGGAGGACTACCTCTGGCTCTTGAAGTGCTTGGTTCTTATTTATTTGACAAGACGTCAAAGAAAGTGTGGGAAGGAGTATTGTCGATACTAGAAAAAATTCCCAATGATGAGGTTCAGCGGAAATTAAGAATAAGCTTTGATAGTTTAAGCAATCACATGGAGAAGGATATATTTCTTGATGTATGTTGTTTCTTTATAGGTAAAGACAGAGGTTATGTCACAGAAATACTAAATGGTTGTGAACTATGTGCTGACGTTGGAATACCGGTTCTCATAGAACGTAGCCTCATAAAAGTAGAAAAAAACAACAAACTTGGAATGCATCCTTTGCTACAAGAAATGGGAAGAGAGATAATTCGTGAAAACTCAAGAAAGGAACCTGGGAAGCACAGTCGATTGTGGTTTCAAAAGGAAGTAGTTGAAGTATTGACAAAGAATACTGGGACAGAAGATATTGAGGGATTGGTTTTGAAAATGCATTTAACCATCAGAGATTGCTTCAAAGCCGATTCTTTCCAGAAAATGGAGAGATTGAGACTGTTGCAACTCCATCATGTACAACTTGATGGAAATTATGGGTACCTTTCTAAGCAACTGAAATGGATCTCTTGGCACGGCTTTCCTTCAAATTGTCTGCCAAACAGCTTTTGTATGAATGATGTAATTGCGATTGATTTAAAGTACAGTCATCTTCGATTCGTCTGGAAACAATCCCAGGATTTGAAGTGGCTAAAAGTCCTTAATCTGAGTCACTCCAGGTACTTGACAGAAACCCCTGACTTTTCTAGACTACCAAGTCTTGAGCAGCTCATTCTCAAAGATTGTCCAAGTTTATTAGCGATACACAAATCCATTGGTGATCTCTGTAATATTTTATTGATAAATTTGAAGGATTGTACAAGCCTAAACAATCTCCCCAAAGAGATATATAAGTTGAAATCTGTGAAAACATTTATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGCACAGATGGAATCCTTGACAACTCTAATTGCTGATAATACTGCTGTGAAACAGGTCCCCGTTTCAATAGTAAGCTCGAAAAGCATTGCATATATATCCTTATGCGGATTTGAAGGACTGGCACGAAATGTTTTTCCTTCTATCATCCAGTCTTGGATGTCACCAACAATGAATCCCCTGTTATTTATTCGTCCGTATTCTGGCACTTCATGTTCTCTGGTTTCCATGAATACACAGAATAATACTTTGGGTGAACTTGCACCTATGCTTAGAAGCCTTCCATATCTTCGAAGTGTTTTGCTGCGATATGAGACAGAGTCTCAACTATCTAAACTTGTAGAAACCTTTCTGGTTGAACATGTTATAAATGTTGCAGAATTAGGAATTTCAAGGCATCACTTGAGGTCATCTTTGATTGGAGTTGGAAGTTACAAAGCACACTTTGATATTCTCAACGATAAAATATCTAAGGGATTGGTAACCAATGAGGCTTGTGAAGTTTCACTTCCAATTGACAATAAACCTTTTTGGTTGGCCCATACAGGTGAGGGACATTCTGTGTTTTTCACTGTGCCGGAGGACTGTGGCATGAAGGGAATGACTTTGTGTATTGTTTATTTATCAAACCCCGAAATCAAGCCCACCGAATGTCTTACTAGTGTCTTAATTGCTAATTACACAAAGCGCACCTTGCAGATACACAGGCAAGAAACAGTGATTTCATTTAATGATGAAGATTGGCAGGTGATAATATCACATTTGGCAGGTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATGACTTGGTGGTCAAGAAAACGGCTGTCTATCTGATGTATGGTGAATCGAACGATATAGAAAGTGGGCCGACGAATTGTGAATCGAATGATGTAGAAATTGAGCCGCCGCATTGTGAATCAAATAATATCGAAATTAAGGCAATATGTATACCAAATGATATTGAAAGTAAGCCGATGCCTTGTGAAGCAAATGCTATCAAAATTGCGGCCATGAATTCCGAATCAAATGTCTTGGAAATGAAGTCTGATCCTAAGCCAAACAGAAATGGATGCATTAGATTCTTCAAGAAATTTGCAATGTGTGACTGGAACACAAGTGGATGA 3294 0.3998 MDFTSSPSFSKAKHQRIHDVFINFRGEDTRRKFVSHLHYALSNAGVNTFFDEENLVKGMQLQELMRAVEGSQIAIVVFSQTYTESTWCLDELEQIIKCNQTQGQSVLPVFYEIDPSDVRHQKGDFGKSLEEAARRTYSGEQLERALSRWSRALNKAAGISGWDVKNFRNEAELVRQIVDRVQKLLDYEVLSITEYPVGLESRAQDVIGLIETRSTQVCMIGIWGMGGSGKTTVAKAVYNQIHRRFMDKSFIENIRETCENHGRGYVPLQEQLLSNVLKTKVEIHSVGMGTTMIESRLDGKTALIVLDDVNEYNQLKAVCGNRKWIGQGSVIIITTRDVGLLTRLDVDYIYGMDKMDEDESLQLFSFHCFGDAKPKEDFSELSRNVVAYCGGLPLALEVLGSYLFDKTSKKVWEGVLSILEKIPNDEVQRKLRISFDSLSNHMEKDIFLDVCCFFIGKDRGYVTEILNGCELCADVGIPVLIERSLIKVEKNNKLGMHPLLQEMGREIIRENSRKEPGKHSRLWFQKEVVEVLTKNTGTEDIEGLVLKMHLTIRDCFKADSFQKMERLRLLQLHHVQLDGNYGYLSKQLKWISWHGFPSNCLPNSFCMNDVIAIDLKYSHLRFVWKQSQDLKWLKVLNLSHSRYLTETPDFSRLPSLEQLILKDCPSLLAIHKSIGDLCNILLINLKDCTSLNNLPKEIYKLKSVKTFILSGCSKIDKLEEDIAQMESLTTLIADNTAVKQVPVSIVSSKSIAYISLCGFEGLARNVFPSIIQSWMSPTMNPLLFIRPYSGTSCSLVSMNTQNNTLGELAPMLRSLPYLRSVLLRYETESQLSKLVETFLVEHVINVAELGISRHHLRSSLIGVGSYKAHFDILNDKISKGLVTNEACEVSLPIDNKPFWLAHTGEGHSVFFTVPEDCGMKGMTLCIVYLSNPEIKPTECLTSVLIANYTKRTLQIHRQETVISFNDEDWQVIISHLAGGDKVEIFVTFGHDLVVKKTAVYLMYGESNDIESGPTNCESNDVEIEPPHCESNNIEIKAICIPNDIESKPMPCEANAIKIAAMNSESNVLEMKSDPKPNRNGCIRFFKKFAMCDWNTSG 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00011 1097 Pfam TIR domain 18 182 IPR000157 GO:0007165
Vium980g00011 1097 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
Vium980g00011 1097 SUPERFAMILY L domain-like 496 825 - -
Vium980g00011 1097 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Vium980g00011 1097 Gene3D - 184 348 IPR027417 -
Vium980g00011 1097 Gene3D Ribonuclease Inhibitor 551 879 IPR032675 -
Vium980g00011 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Vium980g00011 1097 SMART till_3 17 159 IPR000157 GO:0007165
Vium980g00011 1097 Pfam NB-ARC domain 209 436 IPR002182 GO:0043531
Vium980g00011 1097 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 162 IPR035897 -
Vium980g00011 1097 PRINTS Disease resistance protein signature 296 310 - -
Vium980g00011 1097 PRINTS Disease resistance protein signature 219 234 - -
Vium980g00011 1097 PRINTS Disease resistance protein signature 389 403 - -
Vium980g00011 1097 PRINTS Disease resistance protein signature 628 644 - -
Vium980g00011 1097 Gene3D - 354 439 IPR042197 -
Vium980g00011 1097 Gene3D - 10 183 IPR035897 -
Vium980g00011 1097 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 762 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium980g00011 Vium-Chr980 72935 78798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium980g00011 7 745 WRKY Transcription Factor Family AT4G12020 28.834 4.39e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium980g00011 - - vun:114167037 1708.73