Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00007 ATGGATTTCCAGCACAGTAATCTCAGACTACTGTGGAAAGAACCCACGGTTTTTCCGTTGCTAAAAATCCTGAATCTTAGTCATTCAAAGTACTTGACAGAAACCCCTGATTTTTCAAAATTACCAAGTCTTGAAAAGCTCATTCTCAAGCATTGTGTAAGTTTGGGCAAGGTACACCAATCTATTGGATATTTACACAATCTTGTACTAATAAATTTGAAAGGCTGTACAAACCTAAGCAATCTCCCAAGTGAGGCATATAAGTTGAAATCTTTGAAAACTCTTATCCTATCTGGTTGTCTAAAGATTGACATCTTTAAAGAAGATATATTGCACATGAAATCCTTGAAAACTCTAATTTCTGAAAATACTGCTGTGGAACAAGTTCCCATTTCAGTTGTAAGCTCAAAAAGCATTGGATATATACATGTAGACGAAGAAAAGGGATTATCACTTACTGTTCTTCATTCTATAATTTTGTCTTGGATGTCCCATACTTTCAATCCCCTGTATCGTATTCGTCCGTTTCGTGGCATTTCATCATCTCTGGTATCCATGAATGTGGAGCATAATGATTTGGTAGATCTAGCACCAATCCTTGGAAGCATTTTAAATCTGCGTACTGTTTTAGTACAGCAATATGTCACGGAGTATCCAATACCTCATCAACTGATAGCATTTTTGGAAGAAGTTCAACAAGTTCGTCGTGTAAGTTGGACTACATCTACACAACTTTCCAACAATCCATTCAGTCCATATTTGATTCAATTTGGAGGTTATCAAGAAGAAGTCTTCAATACTCTCCGAAAAAGCATTTATGATGAGGGATTGGCAGGCAGACAGTCTCGTAAAGTTTTTCTCCCTAGTGACAATTATCCTCGTTGGTTGGCTTATATGAATGAGGGACACTCAGTCACTTTCACCTTGCCTGACAATTTTCACATGGATGGAATGATTTTGTGTGTTGAGCATTTATCACGCTTGGGAGACCCAACTCAATATCTGATTTGTGTCTTAGTGGTTAATTACTCAAAGTGCACAATCCAGTTATTCAATCGAGAAACAATAACTTCCTTGAATGATGTTGATTGGCAGGACGTGATATCACATATAGGATGTGGAGAGCAGTTGGAGATTTTTATTATTTTTGAAAAAGGATTTGAAGTCCAGAAGACAGCTGTCTATCTAGTGTGTAATGGATCAATTACTTTCTACTCAAAACCTTAA 1227 0.3684 MDFQHSNLRLLWKEPTVFPLLKILNLSHSKYLTETPDFSKLPSLEKLILKHCVSLGKVHQSIGYLHNLVLINLKGCTNLSNLPSEAYKLKSLKTLILSGCLKIDIFKEDILHMKSLKTLISENTAVEQVPISVVSSKSIGYIHVDEEKGLSLTVLHSIILSWMSHTFNPLYRIRPFRGISSSLVSMNVEHNDLVDLAPILGSILNLRTVLVQQYVTEYPIPHQLIAFLEEVQQVRRVSWTTSTQLSNNPFSPYLIQFGGYQEEVFNTLRKSIYDEGLAGRQSRKVFLPSDNYPRWLAYMNEGHSVTFTLPDNFHMDGMILCVEHLSRLGDPTQYLICVLVVNYSKCTIQLFNRETITSLNDVDWQDVISHIGCGEQLEIFIIFEKGFEVQKTAVYLVCNGSITFYSKP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00007 408 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 5 256 - -
Vium980g00007 408 SUPERFAMILY L domain-like 2 220 - -
Vium980g00007 408 Gene3D Ribonuclease Inhibitor 1 261 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium980g00007 Vium-Chr980 45911 48552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium980g00007 21 133 WRKY Transcription Factor Family AT4G12020 41.593 6.61e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium980g00007 - - vum:124843015 710.294