Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00006 ATGGCATCCGTGTCTTCTTCTCTTTCGTTTTTTTTTAAATTAGTCTCAGGCGAGGTGTTCATCCATTGTTTGGAAGACGACATTCATGAAAATTTCGTTTCTCATCTGAGGTCTGGCCTTTTACAAGCTGGAGTAGAACCTTCTCTGGTTGCCGTGGGAGTGCTGTCAGAGAAATTTATGCCATCAATTACAAGGTTTCAGATTGGAATAGTTGTTTTCACCAAAGCATACATTGAATCTTCTCGGTGTGTTGAAGACCTTGAGAGAATTATTGAATGTCACGAAACTTACGGTCTAATGATTATTCCTGTGTTTTACGATATTGACTCATCCTATGATCAGAAGAGTGATATTGATCCATCCCATGTACGTGATCGGAATCGTGATGTTGATCTATCCGTTGCCCGTGTTTCGAAAGAGAAGTTTAGAAATGCGACGAGAGCACAGAGGACGACAGGGGCGGAGACGAAGATTCCTATGGTAAAAATTTTGAAGATTTGTAAGAGAATCAGACAAAAGGCAAAAATGAGACGCGCACTCAACCGGGTTAGAAATCTGCCTGCTTGGGATGAGAGCAAACACAGGGATGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGTTAAACTAGACCGCGCCTTGCCTGTCACTAAATTTCCTGTTGAATTAGAAATCCACGTGAAAAATGTGATTGAATTGTTTGAAAATCAACCCAACAAAGTCTGTAAGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCTTAGCGAAAGCCATCTACAATAAAATTCCTTTTACATTTGGTGATAAAAGTTTCATTCAAGATATTAGAAAAGTTTGTCAAACAGATGGCAGAAGCGGCCTTGTTCAATTACAAGAGCAACTTCTTTCAGATGTCCTTAAATATGTGAAAATAGAGAGTGGTGAGATGGAAAAAACAACTATCGAGAACCGTCTTTCTGGAAAAAAGTGTTTCATTGTCCTTGATGATGTGAATGAGATAGACCAATTAAAACACCTCTGTGAGAACGGTATACGGTTTCGTGCGGGAAGTGTAATAATCATTACGACTAGACATTTAGACCTGCTTTGTCAACATAAAGTTGATTATGTTTATGAGATGGATGAACTGAACGAAAATGACTCGGCTGAGCTTTTTAGTTGGCATGCTTTTAGACAAGCAAAACCAAGAGAAGACTTCAATAAACTTGCAAGATCAGCCGTTGCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTGAGTAAGAGGTCAGAGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAATTCAGAACATCCTAAGAATAAGCTTTGACGGCTTATGTAACGAAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATCGGGAAAGATAGAGACTATGTCACGGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGACTAAAAGTTCTTATAGAACGTGGACTTGTAAAAATTGAAAAGAAGAATAAACTTGGAATGCATCATTTGCTTCGGGACATGGGACGAGAGATTGTGCGGCAAACTTCAACAATGCAACCTGGGAAGCGCAGTAGATTGTGGGTTCCCAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACAGAAGCGATTGTGGGATTGTCTCTGAACACTAAGTTAACGAACAGTGATTCCTTCAAAGCTGATGCTTTTAAGGAAATGAAGACGTTGAGATTCTTGCAACTTGATCATGTACGGCTAACTGGAGATTACGGCTATCTTTCTAAGCAACTGAGATGTATCTCCTGGCAAGGATTTTCTTTAGAGCACATACCTAACAACTTTTACTTGGAAGGTGCAATTGTAATGGATTTCCAGCACAGTAATCTCAGACTACTGTGGAAAGAACCCACGGTTTTACCGTGGCTAAAAATCCTCAATCTTAGTCATTCAAAGTACTTGACAGAAACCCCTGACTTTTCAAAATTACCCAGTCTTGAAAAGCTCATTCTCAAGCATTGTGTGAGTTTGGGCAAGGTACACCAATCGATTGGAGATTTACACAATCTTCTACTAATAAATTTGAAAGGCTGTACAAACCTAAGCAATCTCCCAAGTGAGACATATAAGTTGAAATCCTTGAAAACTCTTATCCTATCTGGCTGTCTGAAGATTGATATCTTTAAAGAAGATATAATGCACATGAAATCCTTGAAAACTCTAATTTCTCACAATACTGCTGTGAAACAAGTTCCCATTTCAGTTGTAAGCTCAAAAAGCATTGGATATATACAGGTAGACGAAGGAAAGGGATTATCACGTACTGTTCTTCATTCTATCATTTTGTCTTGGATGTCCCATACTTTTAATCCCCTGTATCATATGCGTCCGTTTCGTGGCATTTCACCATCTCTAGCTTCCATGAATGTGGAGCATAATGATTTGGTAGATCTAGCTCCAGTCCTTAGAAGCATTTTAAATCTGCGTACTGTCTTAGTGCAATGTGTCACGGAGTATCCAATACTTCAACAAGTAACAGCTATTTTGGAAGAAGTTCGTTGTGTAACTTGGACTACATCTACACAACTTTCCAACCATCCATTCAGTCCATATTTGATTCAAATTGGAGGTTATCAAGAAGAAGTCTTCAACACTCTCCGCAAAAGCATTTATGATGAGGAATTGGCAGCCAGACAGACTCGTAAAGTTTTTGTCCCTAGTGACAATTATCCTCATTGGTTGGCTTATAAGAATGAGGGACACTCAGCCAAATTCACCGTGCCTGACAATTTTCACATGAATGGAATGATTTTGTGTGTTGAGCATTTATCACGCTTGGGAGACCCAACTCAATATCTTAGTTGTGTCTTAATGGTTAATTACACAAAGTGCATAATCCAGTTATTCAATCGAGAAACACTAACGTCCTTGAATGATGTTGATTGGCAGGGCGTGATATCACATCTGGGATATGGAGACAAGTTGGAGATTTTTATTATTTTTGAGAAAGGATTTGAAGTCCAGAAGACAGCTGTCTATCTAGTGTGTAATGATCAATTGACAGAAAGTCAATGTAACGAGCCCTAA 3132 0.3886 MASVSSSLSFFFKLVSGEVFIHCLEDDIHENFVSHLRSGLLQAGVEPSLVAVGVLSEKFMPSITRFQIGIVVFTKAYIESSRCVEDLERIIECHETYGLMIIPVFYDIDSSYDQKSDIDPSHVRDRNRDVDLSVARVSKEKFRNATRAQRTTGAETKIPMVKILKICKRIRQKAKMRRALNRVRNLPAWDESKHRDDAELVEEIVKSVLVKLDRALPVTKFPVELEIHVKNVIELFENQPNKVCKIGIWGMGGSGKTTLAKAIYNKIPFTFGDKSFIQDIRKVCQTDGRSGLVQLQEQLLSDVLKYVKIESGEMEKTTIENRLSGKKCFIVLDDVNEIDQLKHLCENGIRFRAGSVIIITTRHLDLLCQHKVDYVYEMDELNENDSAELFSWHAFRQAKPREDFNKLARSAVAYCGGLPLALEVLGSYLSKRSENEWRSVLSKLEIIPNTQIQNILRISFDGLCNEMEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGLKVLIERGLVKIEKKNKLGMHHLLRDMGREIVRQTSTMQPGKRSRLWVPKDVLDVLTKNTGTEAIVGLSLNTKLTNSDSFKADAFKEMKTLRFLQLDHVRLTGDYGYLSKQLRCISWQGFSLEHIPNNFYLEGAIVMDFQHSNLRLLWKEPTVLPWLKILNLSHSKYLTETPDFSKLPSLEKLILKHCVSLGKVHQSIGDLHNLLLINLKGCTNLSNLPSETYKLKSLKTLILSGCLKIDIFKEDIMHMKSLKTLISHNTAVKQVPISVVSSKSIGYIQVDEGKGLSRTVLHSIILSWMSHTFNPLYHMRPFRGISPSLASMNVEHNDLVDLAPVLRSILNLRTVLVQCVTEYPILQQVTAILEEVRCVTWTTSTQLSNHPFSPYLIQIGGYQEEVFNTLRKSIYDEELAARQTRKVFVPSDNYPHWLAYKNEGHSAKFTVPDNFHMNGMILCVEHLSRLGDPTQYLSCVLMVNYTKCIIQLFNRETLTSLNDVDWQGVISHLGYGDKLEIFIIFEKGFEVQKTAVYLVCNDQLTESQCNEP 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00006 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 474 IPR027417 -
Vium980g00006 1043 SUPERFAMILY L domain-like 579 845 - -
Vium980g00006 1043 FunFam Disease resistance protein (TIR-NBS-LRR class) 382 464 - -
Vium980g00006 1043 Gene3D - 15 208 IPR035897 -
Vium980g00006 1043 Pfam TIR domain 19 115 IPR000157 GO:0007165
Vium980g00006 1043 SUPERFAMILY "Winged helix" DNA-binding domain 451 557 IPR036390 -
Vium980g00006 1043 Gene3D - 209 375 IPR027417 -
Vium980g00006 1043 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 756 IPR044974 GO:0006952
Vium980g00006 1043 ProSiteProfiles TIR domain profile. 15 212 IPR000157 GO:0007165
Vium980g00006 1043 Gene3D Ribonuclease Inhibitor 567 867 IPR032675 -
Vium980g00006 1043 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 112 IPR035897 -
Vium980g00006 1043 Gene3D - 380 464 IPR042197 -
Vium980g00006 1043 PRINTS Disease resistance protein signature 415 429 - -
Vium980g00006 1043 PRINTS Disease resistance protein signature 322 336 - -
Vium980g00006 1043 PRINTS Disease resistance protein signature 245 260 - -
Vium980g00006 1043 PRINTS Disease resistance protein signature 724 740 - -
Vium980g00006 1043 Pfam NB-ARC domain 228 446 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium980g00006 Vium-Chr980 40871 45452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium980g00006 26 770 WRKY Transcription Factor Family AT4G12020 28.497 2.74e-69 252