Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00005 ATGGCATCTGCATCTTCTTCTTCGTCTTTCTCAAAGTTCAGAATCGATCGCGACGTGTTCATCCATTGTCTGGGATACGACATCCGTCGGAATTTCGTTTCTCATCTCAGTTCTGCCCTTTTGCAGGCTGGAGTAAAACCTTGCCTCCTTGCCGTGGAAATGCAGCAGGAACAATTTGTAGCATCAATCGAAGGGTTTCAGATTGGAATAGTTGTTCTCACCAAGACATACTTTGAATCTTTTCGGTGTGTTGATGAACTTGTGAGAATCATTGAATGTCACGAAACTCACGGCCTAATGGTTATGCCCGTGTTTTACGAAATGGACCGATCCGATTTTGAAAATAGGTTGAAAGCAACTGCAAGAGAAGTCATGAAAGTTGAACACATAATTTGGTCAGGAGAATATCGGAAAACATGGTTCCAGAGGTGGAATGTCGCACTCACCAAAGCTGGAACTTTGCCTACTTGGGAGGAAAGCCAACACAGGAGTGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGCCAAACTAGACTGCCCATTGGGTATAACTAAATTTCCTGTTGGGTTAAAACCCCACGTGAAAAATGTGATGGGATTGTTTGAAAATCAACCCACCAGAGTTTGTACGGTAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCGTAGCCAAAGCCATCTACAATCAGATTCCTTGTGCGTTTGATGATAAAAGTTTCATTCAAGGTATTAGAGAAGTATGTGAAACGGATGGCAGAGGCCTTGTTCATTTACAAGAAAAACTTCCCTCAGATGCCCTTAAAACAAATGTTAAAATAGAGAGTGGTGAGATAAAAAAAATTACGTTCGAGGACAGACTTTTTGGAAAAAAGTTGTTCATTGTGCTTGACGATGTGAAAGAGATAGATCAACTAAAAGACCTACTTGGAAATAATAAACGGCTTGGTCAACGGTTTGGTCAACGGTTTGGTCAAGGAAGTGTAATAATCATTACAACTAGAAATTTAGACCTGCTTTATCAACTTAATGTTGATTATGTTTACGAGATGGACACAATGGACGAAAATGACTCCGTTGAGCTTTTTAATTGGCATGCTTTTGGAGAAGCAAAACCAAGAGAAGACTTCGTTAAACTTGCAAGATCTGCAGTTTCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTAAGTAAGAGGTCAGTGAATGAATGGAGAAGTGTATTGTCAAACGAACTAATTCCCAATACTCAAGTGCAGAACATACTAAGAATAAGCTTTGACGGCTTATGTCTAATGGAAAAGGATATATTTCTTAATGTATGTTGTTTTTTTATTGGTAAAGACAGAGACTATGTTACAGAGATACTAAATGGTTGTGGACTACATGCTGATATTGGAACAAAAGTTCTCATAGAACGTGGTCTTATAAAAATTGAAAAGAACAATGAACTTGGAATGCATCCTTTGCTCCGGGATATGGGACGAGAGATTGTGCGTCAAACTTCAACAATTCAACCTGGGAAGCGCAGAAGATTGTGGCTTCGCAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACAGAAGCTATCGAGGGATTGTCTCTGAACTGTCAGCTTACAAGCAGTGATTTCGTCAAAGCTTGTGCTTTTGAGAAAATGAAGAGGTTGAGATTCTTGCAACTTGATCATGTTGAAGTGAATGGAGATTACGGGTATCTTTCTAAGCAATTGAGATGGATCTACTGGCGAGGATTTCCTTTAAAATACATACCTAACAACTTTTATCTGAAAAAGGCAATTGTGATTGATTTCCAACACAGTAATCTTAGACTAATGTGGAATGAACCCCAGGTGCTGCGGTGGCTGAAAATCCTCAATCTCAGTCATTCCATGTTCTTAATTGAAACTCCCGACTTTTCAGAACTACGAAGTCTTGAAAAGCTCATTGTCAAAAATTGTCCAAGATTGCGCAAGGTACACCAATCCATTGGGGATCTCCACAATCTTGTGCTAATAAATTTGAAAGGCTGTAGAAGGCTACGCAATCTTCCAACTGAGGCATATAAGTTGAAATCTTTGAAAACTCTCATCCTGTCTGGTTGTTTGAAGATTCACATATATGAAAAAGATATATTGTGTATGGGATCATTGACAACTCTAATTTCTGAAAATACTGCTGTGAAACAAGTTCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGACATATACTTCTGGGAGGAAATAATGGATTATCATTTACTGTTTTTCAATCTATCATTTCGTCTTGGATATCACCTAAAATTAATTTCCTGTCTGGTATTCGTCCGTTTCGGGGCATATCTTCATCTCTAGTTTCCATGAGTATGGAGGATAATGATTTGGGTGATCTAGCACCAATCCTTAGCAGCGATTTAAATATTCTTAATGTTTTGGTGCAATGTGACGTGGAGTTTCAAAGATACCAACAAGTAATGGCAATTTTGGATGAGATACGAGGTCTAAACTTGACTGAATTTGAAATAAGACCATCTACACCAGAAACTTCAAAGCATCGTTTAACCCCTCATTTGATTGAATTCGGAAGTTTCCAAGAAGAAGTCTTCGATATTCTCAGCAAGAGCATATTTGAGGGATCAGAAAACAGTGCATCTTGA 2685 0.3892 MASASSSSSFSKFRIDRDVFIHCLGYDIRRNFVSHLSSALLQAGVKPCLLAVEMQQEQFVASIEGFQIGIVVLTKTYFESFRCVDELVRIIECHETHGLMVMPVFYEMDRSDFENRLKATAREVMKVEHIIWSGEYRKTWFQRWNVALTKAGTLPTWEESQHRSDAELVEEIVKSVLAKLDCPLGITKFPVGLKPHVKNVMGLFENQPTRVCTVGIWGMGGSGKTTVAKAIYNQIPCAFDDKSFIQGIREVCETDGRGLVHLQEKLPSDALKTNVKIESGEIKKITFEDRLFGKKLFIVLDDVKEIDQLKDLLGNNKRLGQRFGQRFGQGSVIIITTRNLDLLYQLNVDYVYEMDTMDENDSVELFNWHAFGEAKPREDFVKLARSAVSYCGGLPLALEVLGSYLSKRSVNEWRSVLSKXELIPNTQVQNILRISFDGLCLMEKDIFLNVCCFFIGKDRDYVTEILNGCGLHADIGTKVLIERGLIKIEKNNELGMHPLLRDMGREIVRQTSTIQPGKRRRLWLRKDVLDVLTKNTGTEAIEGLSLNCQLTSSDFVKACAFEKMKRLRFLQLDHVEVNGDYGYLSKQLRWIYWRGFPLKYIPNNFYLKKAIVIDFQHSNLRLMWNEPQVLRWLKILNLSHSMFLIETPDFSELRSLEKLIVKNCPRLRKVHQSIGDLHNLVLINLKGCRRLRNLPTEAYKLKSLKTLILSGCLKIHIYEKDILCMGSLTTLISENTAVKQVPFSIVSSKSIGHILLGGNNGLSFTVFQSIISSWISPKINFLSGIRPFRGISSSLVSMSMEDNDLGDLAPILSSDLNILNVLVQCDVEFQRYQQVMAILDEIRGLNLTEFEIRPSTPETSKHRLTPHLIEFGSFQEEVFDILSKSIFEGSENSAS 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00005 895 Gene3D - 356 440 IPR042197 -
Vium980g00005 895 Pfam TIR domain 18 179 IPR000157 GO:0007165
Vium980g00005 895 Gene3D Ribonuclease Inhibitor 490 838 IPR032675 -
Vium980g00005 895 ProSiteProfiles TIR domain profile. 15 180 IPR000157 GO:0007165
Vium980g00005 895 SUPERFAMILY "Winged helix" DNA-binding domain 427 532 IPR036390 -
Vium980g00005 895 Gene3D - 11 177 IPR035897 -
Vium980g00005 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 448 IPR027417 -
Vium980g00005 895 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 153 IPR035897 -
Vium980g00005 895 Pfam NB-ARC domain 203 420 IPR002182 GO:0043531
Vium980g00005 895 Gene3D - 178 351 IPR027417 -
Vium980g00005 895 SUPERFAMILY L domain-like 557 821 - -
Vium980g00005 895 PRINTS Disease resistance protein signature 391 405 - -
Vium980g00005 895 PRINTS Disease resistance protein signature 213 228 - -
Vium980g00005 895 PRINTS Disease resistance protein signature 699 715 - -
Vium980g00005 895 PRINTS Disease resistance protein signature 290 304 - -
Vium980g00005 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 729 IPR044974 GO:0006952
Vium980g00005 895 SMART till_3 16 154 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium980g00005 Vium-Chr980 34306 38956 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium980g00005 16 745 WRKY Transcription Factor Family AT4G12020 29.084 1.70e-72 259