Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium980g00004 ATGCTTCGTTTTCTCGCAACTGTGTCAAAAATTTCTCTGCCTTTACCGCAATCAGCAGTTATAAAAGCTCTGCGAGTGTTCAGTTCCACCACCTGTTCGACCATTTGCCTCACCCAAACCAAGATTGAAGTTGAAGATGATAAAAACAAATGGAGTGATGCTACTGAACTTTTGAGCAAATGGGGTTGCAGTGATGATGATTTGAAGAGAATTTTCTCGCGCTGTCCCTCTTTGCGCAATGCTGATCCCACGCTGGTTCAATCTAAACTGTGCCTGCTTAGTGATTTGGGCTTGCGTGCTTCTCAACTTGTGAAGATTGTCAATTGTAGACCACGGTTTTTCCAGTGTCGGATTAACTCTTTTCTAGTAGAGAGGATTGAACATCTTACATCATTGTTTGAGTCGAGGGATGTGCTTCAAAAGGCAATTGTGAGGAACCCTTCATTGTTGCTATCGGAGGGTCGCTATAATGTTAAGGCTACAGTTGAGCTCTATGAGAAGTTGGGTGTTAAGAAGGGGGAATTAGTTCAGATGCTGCTTTTGCGGCCCACGGTTATTTCAAGGACTTCCTTTGATGCTGAGAAGCTGGAATATTTAAGCAAGACTGGGCTTGCTACGGATTCAAAGATGTATAAATATATGGTGACTTTAATTGGAATCTCTCGCATAGAAACTATCCGGGAGAAGGTGGCGAATCTCGCAAAGTTTGGGTTTTCTGAAGAGGAGATATTTGGTCTTATGGGGAGGTCTCCTAATGTTTTGACATTGTCGACAGACAAGGTTCAGAGGAACATGACTTTCATTTTGGGCACCATGAAGCTTGATGCTAAGATGGTTCTAAAGCAGCCGTATTTATTGTATGCAAACGTGGATACTGTTTTGAAGCCAAGAGTTCTACTAGCATTGAAGATTCAAGATATGGATTCAAAGTGGCAAATCATAGGACCAACGATAGTAAGTTTGCTTAGGATGCCAGAGAAGAGATTTTTGGACATGTTTGTCAAATGCCATGGCGAGGATGTTGCCAATGAATTGATGGATTTCTATAAAAGGACAAAAGAGGTCAAGAGATTAGGAGAGGCATCAAAGAAGTGCAGTAAGAGAGGATTCCCTTTCTGA 1119 0.42 MLRFLATVSKISLPLPQSAVIKALRVFSSTTCSTICLTQTKIEVEDDKNKWSDATELLSKWGCSDDDLKRIFSRCPSLRNADPTLVQSKLCLLSDLGLRASQLVKIVNCRPRFFQCRINSFLVERIEHLTSLFESRDVLQKAIVRNPSLLLSEGRYNVKATVELYEKLGVKKGELVQMLLLRPTVISRTSFDAEKLEYLSKTGLATDSKMYKYMVTLIGISRIETIREKVANLAKFGFSEEEIFGLMGRSPNVLTLSTDKVQRNMTFILGTMKLDAKMVLKQPYLLYANVDTVLKPRVLLALKIQDMDSKWQIIGPTIVSLLRMPEKRFLDMFVKCHGEDVANELMDFYKRTKEVKRLGEASKKCSKRGFPF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium980g00004 372 Pfam mTERF 124 330 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 Pfam mTERF 57 150 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Vium980g00004 372 Gene3D Transcription termination factor 3, mitochondrial 135 343 IPR038538 -
Vium980g00004 372 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Vium980g00004 372 PANTHER CGI-12 PROTEIN-RELATED 43 337 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium980g00004 mTERF 7.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium980g00004 K15031 - gmx:100799629 598.586