Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9808g00001 ATGACGACCACGGAGTCCGATCTCGATAACGACTTTCCTAATCTCGACGAGCTCCGGTATCTGAACCTCGCCGGAACCGATGTCTTCGCCGCTTTCCAAAATCTATTACCGGATGCCATGACTTCATTTTCTTGTGGACTGACAGATCCTTTTTCTTCCCAAAACCTCACTCCCAAGCATTCCACCATCACTGCTACAATCGATTCTCGGTCTTCCATTTGTGGCACTGCTAATGTTGGTAGTCCAGTGTCAGCTAATAAACCAGAGGGCTGGAAGAATCATACGAAAGGAGCCACAAGTGGTTCTTCTGAGCCATCTGATGAAGATGGTCCTTGTGAACAGAGCACAAATTCAGTTGAATTGAAACGTCTTAGAAGGAAGGTTTCTAATCGCAATTCTGCCAGAAGGTCAAGAAGAAGAAAACAGGCGCAGTTGGCTGACCTAGAGTTGCAGGTTGAAAAACTGAAAGTGGAAAACGCAACCCTATACAAGCAGTTCAATGATGCTAGTTAACATTTTTTTGAGGCTGACACGTATAACCGGGTTCTGAAATCAGACGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGACATGGTGACTAGAGGCTCTTTCACTACGTTAAACAATCAGCTTCTTCCCACACAGTGTCAAGTGAACACACCCCCGCCACTGAATACGACCAATCTCCGCCGCATGGCGCATGTTTCGCCAACCATCACTGTGCATGGAAATGATGGCTCATACAACGATGCCACAGTTTGTGTACAGAATTCAGACCTTGGAAACTTGGACATGAATTTCAACGACATGAACAATGTGAACGTAGTTATGAGCGATGGCATGAGTTGTGGGAGTATTTGGCCACCTTTTTAG 879 0.4573 MTTTESDLDNDFPNLDELRYLNLAGTDVFAAFQNLLPDAMTSFSXCGLTDPFSSQNLTPKHSTITATIDSRSSICGTANVGSPVSANKPEGWKNHTKGATSGSSEPSDEDGPCEQSTNSVELKRLRRKVSNRNSARRSRRRKQAQLADLELQVEKLKVENATLYKQFNDASXHFFEADTYNRVLKSDVEALRAKVKLAEDMVTRGSFTTLNNQLLPTQCQVNTPPPLNTTNLRRMAHVSPTITVHGNDGSYNDATVCVQNSDLGNLDMNFNDMNNVNVVMSDGMSCGSIWPPF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9808g00001 293 Coils Coil 132 166 - -
Vium9808g00001 293 MobiDBLite consensus disorder prediction 77 119 - -
Vium9808g00001 293 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 126 141 IPR004827 GO:0003700|GO:0006355
Vium9808g00001 293 Gene3D - 122 174 - -
Vium9808g00001 293 PANTHER BASIC LEUCINE ZIPPER 63 53 278 - -
Vium9808g00001 293 Pfam bZIP transcription factor 121 168 IPR004827 GO:0003700|GO:0006355
Vium9808g00001 293 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 121 166 IPR004827 GO:0003700|GO:0006355
Vium9808g00001 293 SMART brlzneu 119 183 IPR004827 GO:0003700|GO:0006355
Vium9808g00001 293 Coils Coil 181 201 - -
Vium9808g00001 293 MobiDBLite consensus disorder prediction 94 119 - -
Vium9808g00001 293 SUPERFAMILY Leucine zipper domain 123 170 IPR046347 GO:0003700|GO:0006355
Vium9808g00001 293 FunFam BZIP transcription factor 121 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9808g00001 Vium-Chr9808 751 5542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9808g00001 69 291 bZIP Transcription Factor Family AT5G24800 47.391 2.81e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium9808g00001 bZIP_1 6.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9808g00001 K25784 - gmx:780555 394.43