Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9807g00001 ATTGATGTGGTAAAATATGTAGGAATTTCTACCAGCTTTGGATCTATCATTTTACTTCTTATTTTATGGCGGGTGTTCAAGGTTACAAAGAAAATCATAATGAAGAAATTTAGAGAAAAATTCTTCAAAAGAAATGGAGGATTGTTGTTACAACAAAAATTGTCTTCTGGTGAAGTTAATATGGATAAAGTTAAACTCTTCAGCTTAAAAGAATTGGAGAAGGCCACCGATAACTTTAATTCAAACAGAGTACTTGGAAAAGGAGGTCAAGCTACTGTTTACAAAGGCATGTTGATAGATGGAACAATCATTGCAGTGAAAAAATTTAAGGTCCAAGGAAAGATTGAAGAATTTATCAACGAATTTGTCATTCTTTCACAAATTAACCATAGGAATGTGGTTAAGTTGTTAGGAAGTTGTTTGGAGACTAAAATTCCTTTGCTTGTTTATGAATTCATTCCTAATGGTAATCTTTTCGAGTTCTTGCATTTACAAAATGAGGATATGCCATTGACATGGAACATGCGTTTGAGAATTGCCATTGAAGTTGCAGGAGCTTTATTTTACTTGCACTCTGCCGCTTCTCAACCTATTTATCATAAAGACATCAAGTCAACAAATATACTATTGGATGAAAAGTATAGGGCGAAAGTAGCAGACTTTGGTACATCAAGAATGATTTCCATTGATGTTACACACCTTACTACAGTAGTTCAAGGAACATTTGGATACTTGGATCCTGAATTTTTTCAAACTAGTCAATTCACAGAAAAAAGTGATGTGTACAGTTTTGGAGTAGTTCTTGTTGAACTTTTAACAGGACAAAAGCCAATAACCCTCCTAAGTCAAGAGGAAGCTAAAAGTTTAGCTTCGTATTTCATCATGTGTGTGGAGGAAAATTGTGTGTTTGATATTATTGATGAAAGAGTGATGAAGGAAGGGGATTCCTTCTTTTAG 957 0.3386 IDVVKYVGISTSFGSIILLLILWRVFKVTKKIIMKKFREKFFKRNGGLLLQQKLSSGEVNMDKVKLFSLKELEKATDNFNSNRVLGKGGQATVYKGMLIDGTIIAVKKFKVQGKIEEFINEFVILSQINHRNVVKLLGSCLETKIPLLVYEFIPNGNLFEFLHLQNEDMPLTWNMRLRIAIEVAGALFYLHSAASQPIYHKDIKSTNILLDEKYRAKVADFGTSRMISIDVTHLTTVVQGTFGYLDPEFFQTSQFTEKSDVYSFGVVLVELLTGQKPITLLSQEEAKSLASYFIMCVEENCVFDIIDERVMKEGDSFF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9807g00001 318 Gene3D Transferase(Phosphotransferase) domain 1 153 316 - -
Vium9807g00001 318 SMART serkin_6 79 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9807g00001 318 FunFam Wall-associated receptor kinase 2 153 317 - -
Vium9807g00001 318 FunFam Wall-associated receptor kinase 2 49 152 - -
Vium9807g00001 318 SUPERFAMILY Protein kinase-like (PK-like) 60 288 IPR011009 -
Vium9807g00001 318 ProSiteProfiles Protein kinase domain profile. 79 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9807g00001 318 Pfam Protein tyrosine and serine/threonine kinase 82 287 IPR001245 GO:0004672|GO:0006468
Vium9807g00001 318 Gene3D Phosphorylase Kinase; domain 1 50 152 - -
Vium9807g00001 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vium9807g00001 318 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 314 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9807g00001 Vium-Chr9807 7466 8423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9807g00001 7 310 Receptor kinase-like Gene Family AT1G69730 65.472 1.17e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium9807g00001 PK_Tyr_Ser-Thr 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9807g00001 - - vra:106774873 593.964