Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9803g00005 ATGGCGCTTTCTTCACCCAAACACTTACCTCCAACACTCTTCTTCTTCCTTTTTTTTTTGCCGACTGTGTTCGGTGCCTCTCATGGAAGCAGCAGCAGCAGCAGCAACCCCGTGGGATTCGAGTTTCTGAAGGTTTCGCCTTCTGAATTTGCGGGGACAGTGAAAACTGTGGTTGATGTGTTGCAAGATGTGACCTCTATTCTCTCTGAGTTCGGTTCTGGCTTCGGGGACTCGCTTCTTTCTAACGCCGTCTCTGATTGTCTAGATTTGCTTGACCTCTCCTCTGATGAACTTGATTGGTCTGTCGCTGCTACACAGACTCCCCACGGGAAGCATAACAGCACAGGAAACCAAAGTTCAGATTTGAGGACATGGCTGAGTGCTGCACTTGCGAACCAAGACACATGCATGGACGGATTCGACGGCACCAACGGCGTTGTGAAGGGTTTAGTGTCCACAGGGCTTGGCCAAGTGATGTCATTGCTGCAACAACTTCTTACACAGGTGAACCCCATGTCGAACCAATTCCCTTTCTCTCCCACAGAGGGGCAGTTTCCGTCGTGGGTTAAACCAGGTGACAGGAAGCTGCTCCAGGCAAATGGGGTGGTCGTGGATGCGGTGGTTTCCACCGATGGCACCGGGGACTTCACCAAAATCACCGATGCAGTCTTGGCTGCGCCTAATTACAGCATGAAACGCTACGTGATATTCGTGAAGAGAGGGGTTTACCATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATCGGAGAAGGCATGAATGTTACTGTTATCACCGGGAACAGGAGCTTCGTCGACGGTTGGACAACGTTCCGGTCAGCAACTTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATTACCTTCCAGAACACAGCAGGAGCAGTGAAGCACCAAGCTGTGGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTCCGGTTACCAAGACAGCCTCTATACTCACACCATGCGCCAATTCTACAGAGAATGCAGAATCAGTGGAACCGTGGATTTCATATTTGGTGATGCCACTGTAATTTTCCAAAACTGCCTCATAGAGGTAAGAAAAGGGTTACCGAATCAAAAGAACACCATCACAGCTCAAGGAAGGAAAACCCCTGACGAACCAACTGGTTTCTCGATCCAGTTTTGCAACATTTCTGCTGATTCTGAGCTTGTGAACTCTGTGAACTCCACCCACACATATCTTGGCAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTTACATGAGTGATGTGTTGAGCCCAGAAGGATGGTTGGAGTGGGATGGGGACTTTGCCTTGGACACGTTGTACTATGCAGAGTACTTGAATTATGGAGCTGGTTCTGGAGTTGGTAATCGAGTGAAATGGCCAGGGTACCATGTCATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTGTCACAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGTGTAGCTTTCACAGCTGGATTGGAAGAATGA 1557 0.4836 MALSSPKHLPPTLFFFLFFLPTVFGASHGSSSSSSNPVGFEFLKVSPSEFAGTVKTVVDVLQDVTSILSEFGSGFGDSLLSNAVSDCLDLLDLSSDELDWSVAATQTPHGKHNSTGNQSSDLRTWLSAALANQDTCMDGFDGTNGVVKGLVSTGLGQVMSLLQQLLTQVNPMSNQFPFSPTEGQFPSWVKPGDRKLLQANGVVVDAVVSTDGTGDFTKITDAVLAAPNYSMKRYVIFVKRGVYHENVEIKKKKWNLMMIGEGMNVTVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGAVKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECRISGTVDFIFGDATVIFQNCLIEVRKGLPNQKNTITAQGRKTPDEPTGFSIQFCNISADSELVNSVNSTHTYLGRPWKQYSRTVFMQSYMSDVLSPEGWLEWDGDFALDTLYYAEYLNYGAGSGVGNRVKWPGYHVMNDSSQASNFTVSQFIEGNLWLPSTGVAFTAGLEE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9803g00005 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 172 IPR035513 -
Vium9803g00005 518 Gene3D - 203 518 IPR012334 -
Vium9803g00005 518 FunFam Pectinesterase 199 516 - -
Vium9803g00005 518 PANTHER PECTINESTERASE 55 506 - -
Vium9803g00005 518 SUPERFAMILY Pectin lyase-like 205 515 IPR011050 -
Vium9803g00005 518 CDD PMEI-like_4 43 173 - -
Vium9803g00005 518 SMART PMEI_2 26 168 IPR006501 GO:0004857
Vium9803g00005 518 Pfam Plant invertase/pectin methylesterase inhibitor 74 151 IPR006501 GO:0004857
Vium9803g00005 518 FunFam Pectinesterase 28 171 - -
Vium9803g00005 518 Pfam Pectinesterase 205 502 IPR000070 GO:0030599|GO:0042545
Vium9803g00005 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 164 IPR035513 -
Vium9803g00005 518 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9803g00005 Vium-Chr9803 37304 41409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9803g00005 14 516 Carbohydrate Esterase AT3G43270 63.495 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9803g00005 K01051 - gmx:100801813 835.484