Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9803g00004 ATGGCTGTTTTCTGGACAAAACAACTGGCTGCCACATTCATCTTCATCTTCTTCTTTGTTCCCTGTGATTTGGCGATACTCCACACGCTCAAAGTTTCTCCTTCCGAATTCGTAAGCTCCGTGAGAAAAGTAGGTGATGTTTTGCAAAACGTTACCTCCACTCTCAAATCTGAGTTCAGCAATGTCAAGAGTGAGTTTCCTCGTTCTGATGCCGTTGTCGCATGTCTTGAGTTGTTGGACTTGTCAGTTGATGAACTGAGCTGGTCCATTTCCACAGTTGAAAGTCCCCAAGGGAAGCATAACAGTACTGGGAATCTGAGCTCTGATTTGAGGACATGGCTAAGTGGTGTACTTGCGAACACAGACACGTGCATGGATGGTTTTGAAGATACAGGGGGGAATGTGAAGGATGTGATATACGATGGAATTAAGGAAGCGACGTTGTTGCTCAAAAAGCTGGTGAACCAGGTTGGTTCGAATTCTTTCATAATGGACGAAGTTCCTGCATTGGTTGAACCGCTGCTGCAGAGCAAAACGATGCCTGTGGATGCCGTTGTTGCTGCCGATGGGAGTGGTAAATTTACTACGGTGATGGACGCTGTGAACGCAGCTCCTGAATATAGCATGAGACGCTTTGTGATACACATAAAGAAGGGCTTGTACACCGAGAATGTTGAGATTAAGAAGAAAAAATGGAACATTATGATGATTGGAGAGGGCATGGATGATACTGTTATCTCCGGTAACCTCAGCCGTACTAAAAATTTAACTACATACAGAACTGCTACCTTTGCTGTGAATGGGAGAGGATTCATAGCAACAGACATTTCCTTCAGGAACACTGCAGGACCCGAAAGAAACCAGTCTGTTGCACTGAGATCAGACTCTGACCTTTCTGTGTTTCTCCGATGTGGGATTTTTGGCTACCAAGACAGCCTCTATGCCCACTCCTTGCGCCAATTTTACAGAGAATGCAAAATTAGTGGTACTGTGGATTTCATATTTGGACATGCCAGTGCAGTGTTCCAGAACTGCACAATACTGGTGAAGAAAGGGATACATAATCAGAAGAACACAATCACAGCTCAAGGAGAAACGTTGCCTCATGGATCATCTGGCTTCTCCATCCAATTCTGCAACATTTCAGCAGACCATGACCTTCTGCCCTCAGTTAACACCACCTCAACGTACCTTGGCAGACCGTGGAAGAATTATTCTAGAGCTGTTTTCATGCAGTCTTACATAAGTGAGGTGTTAAGCCCAGAAGGGTGGCTAGAGTGGGAAGGATCATTGTATTTGGACACTTTGTACTTTGGAGAGTACAAGAATTATGGACCAGGAGCTAGGGTTGATAACAGAGTGAAATGGCCAGGGTACCATGTCATAAATGATTCTAACCAGGCTTATAACTTCACTGTGGCCAATCTCCTTCTGGGGGATCTTTGGTTACCTTCAACTGGTGTAACATACACTCCTGGATTTGGTAACTGA 1491 0.4474 MAVFWTKQLAATFIFIFFFVPCDLAILHTLKVSPSEFVSSVRKVGDVLQNVTSTLKSEFSNVKSEFPRSDAVVACLELLDLSVDELSWSISTVESPQGKHNSTGNLSSDLRTWLSGVLANTDTCMDGFEDTGGNVKDVIYDGIKEATLLLKKLVNQVGSNSFIMDEVPALVEPLLQSKTMPVDAVVAADGSGKFTTVMDAVNAAPEYSMRRFVIHIKKGLYTENVEIKKKKWNIMMIGEGMDDTVISGNLSRTKNLTTYRTATFAVNGRGFIATDISFRNTAGPERNQSVALRSDSDLSVFLRCGIFGYQDSLYAHSLRQFYRECKISGTVDFIFGHASAVFQNCTILVKKGIHNQKNTITAQGETLPHGSSGFSIQFCNISADHDLLPSVNTTSTYLGRPWKNYSRAVFMQSYISEVLSPEGWLEWEGSLYLDTLYFGEYKNYGPGARVDNRVKWPGYHVINDSNQAYNFTVANLLLGDLWLPSTGVTYTPGFGN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9803g00004 496 CDD PMEI-like_4 29 161 - -
Vium9803g00004 496 Pfam Plant invertase/pectin methylesterase inhibitor 49 145 IPR006501 GO:0004857
Vium9803g00004 496 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 147 IPR035513 -
Vium9803g00004 496 SMART PMEI_2 33 164 IPR006501 GO:0004857
Vium9803g00004 496 FunFam Pectinesterase 177 494 - -
Vium9803g00004 496 SUPERFAMILY Pectin lyase-like 180 493 IPR011050 -
Vium9803g00004 496 PANTHER PECTINESTERASE 47 484 - -
Vium9803g00004 496 Gene3D - 181 495 IPR012334 -
Vium9803g00004 496 Pfam Pectinesterase 183 479 IPR000070 GO:0030599|GO:0042545
Vium9803g00004 496 ProSitePatterns Pectinesterase signature 2. 327 336 IPR033131 -
Vium9803g00004 496 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 157 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9803g00004 Vium-Chr9803 30931 32814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9803g00004 1 494 Carbohydrate Esterase AT3G43270 52.462 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9803g00004 K01051 - gmx:100798620 714.916