Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9803g00002 ATGGCTCATTCATCTCATAAACTCTTCTTTCTTCTCCTTGTAAGCTTCTACTCACACACTTTTGCTGTCAACTCCTATGCTTCCACAACACATCAGTCCAATCTCTCTTCCTTAAGATCTTTCTGCATAACCACCCCATATCCAGAAGTTTGTTTCAATTCATTGAAGCCATCCATCTCAATAAACATAAGTCCGAACGTTAACAGCTACCTCCTTCAGTCCCTGCAAGTAGCAATATCTGAAACCACAAAGCTCACCAATATCTTCCACAATGTTGGACACTCAAACATCATAGAGAAGCAAAGAGGAGCAATTCAGGACTGCCGAGAACTCCACCAATCCACATTGGTTTCTTTGAAAAGATCACTATCAGCGATCCGTTCCTCCAACTCCATGAGCATAGTTGATGCAAGAGCCTACCTCAGTGCAGCTGTCACCAACAAGAACACATGCTTGGAAGGCCTGGATTCTGCTTCTGGCACCATGAAGCCAGCGCTGGTGAAATCTGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTATGCTACCGAAGCCTGAGACGGGGACTCCCGGTGACCAGAAGAATGACCACCCTTTGATGAATGCTCCAAAGTGGTTATCGAGCCGAAAGCAAGGAACTTTTAAAGATATGGAAGAGTATAACCCAAATGAAGTGCTAGTTGTGTCTGCAGATGGAAGTGGGGACTTTAGCACCATCACTGAAGCCATCAACTTTGCTCCAAATAACAGCATGGATAGGACAGTGATCTATGTCAAAGAAGGGATTTATGAGGAAAACGTGGAAATCCCAATTTATAAAACCAACATTGTGCTGAGAGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATCGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTATTGCTCGTGATATTGCAATTGAGAACAGTGCAGGGCCAGAGAAGGACCAAGCAGTGGCCTTGAGGGTAAATGCACACTTCACGGCATTTTACAGGTGTGCAATTAATGGCTACCAAGACACTTTATATGTTCACTCCTCTAGACAATTTTACAGAGAGTGTGACATTTCTGGGACCATAGACTTCATATTTGGAAATGCAGAAGTGATTCTACAAGATTGTAACATCATATCCAGAAAGCCCTTGCCTGGGCAATTCACTGTTATCACCGCACAATCCAGAGATAGCCCTGATGAGGACACCGGCATCTCAATCCAGAACTGCTCAATCATAGCTACCTCTGATCTGTATTCCAACTCTAGCAGTTTCAAGAGCTACCTTGGGAGGCCATGGGGGAAATATTCTCGCACCGTTTACCTTGAGTCCTTCATTGGTGACTTCATTGACCCAAAGGGTTGGATAGAATGGAATAATGATAACAAAAGATCGGACACATTGTACTATGGAGAATATGAAAACTATGGACCCGGTTCCACCACAGATAATCGTGTACGATGGTTAGGCTACCATTTGATGGATTATGACGATGCATATGATTTCACAGTTTCGCAGTTCATCAATGCAGATGATTGGCTTGATACTACTTTGTTACCTTATGATAACGGGCTTTGA 1617 0.436 MAHSSHKLFFLLLVSFYSHTFAVNSYASTTHQSNLSSLRSFCITTPYPEVCFNSLKPSISINISPNVNSYLLQSLQVAISETTKLTNIFHNVGHSNIIEKQRGAIQDCRELHQSTLVSLKRSLSAIRSSNSMSIVDARAYLSAAVTNKNTCLEGLDSASGTMKPALVKSVINTYKHVSNSLSMLPKPETGTPGDQKNDHPLMNAPKWLSSRKQGTFKDMEEYNPNEVLVVSADGSGDFSTITEAINFAPNNSMDRTVIYVKEGIYEENVEIPIYKTNIVLRGDGSDVTVITGNRSVGDRWTTFRSATLAVSGDGFIARDIAIENSAGPEKDQAVALRVNAHFTAFYRCAINGYQDTLYVHSSRQFYRECDISGTIDFIFGNAEVILQDCNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSIIATSDLYSNSSSFKSYLGRPWGKYSRTVYLESFIGDFIDPKGWIEWNNDNKRSDTLYYGEYENYGPGSTTDNRVRWLGYHLMDYDDAYDFTVSQFINADDWLDTTLLPYDNGL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9803g00002 538 CDD PMEI-like_3 40 183 - -
Vium9803g00002 538 MobiDBLite consensus disorder prediction 182 201 - -
Vium9803g00002 538 Gene3D - 222 538 IPR012334 -
Vium9803g00002 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 184 IPR035513 -
Vium9803g00002 538 SMART PMEI_2 33 183 IPR006501 GO:0004857
Vium9803g00002 538 Pfam Pectinesterase 228 524 IPR000070 GO:0030599|GO:0042545
Vium9803g00002 538 FunFam Pectinesterase 221 538 - -
Vium9803g00002 538 FunFam Pectinesterase 34 186 - -
Vium9803g00002 538 SUPERFAMILY Pectin lyase-like 225 535 IPR011050 -
Vium9803g00002 538 PANTHER PECTINESTERASE 17 528 - -
Vium9803g00002 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 186 IPR035513 -
Vium9803g00002 538 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Vium9803g00002 538 NCBIfam pectinesterase inhibitor domain 8 184 IPR006501 GO:0004857
Vium9803g00002 538 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9803g00002 Vium-Chr9803 9152 11237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9803g00002 36 538 Carbohydrate Esterase AT2G26440 62.984 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9803g00002 - - gmx:100776969 877.47