LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9803g00001	ATGGCCTTCCAGGATTTCGAGCAAATCACTGAGCGCCGAAGAAACGAGAACAGACTCAAGCTCAGGAAGAAGATCTTAATCAGCGTTGTTTCCGCCGTTCTTCTTGCATGCGTGGTTGGCGCCGCCACATTCGTGGTTGTCCAGAGAACCGGTGGTTCCTCCACAAAAACCGCAACCCCAATACAAGACGCCTCCGCGAGGCCACACGTGGACCAAAGCTCCAGGCTGGTAGAAATGATCTGCAGCTCCGCGGAGTACAAAGAGAAATGCAAGAAAACCCTCGGTGAGGCTCTGGAGAAGGACCCGAAGCTGACGGAGCCCAAGGACCTGCTCAAGGTCTCCTTTATCCTTGCCGAGAACGAGATGAACAAAGCCTTCAACGAAACCACGAAAATGGAGTTCGCGTCGGCACAGGAGAAAGGCGCGTACAGTGATTGCAAGGAGATGTTCGATGACGCCAAGGATGAGCTGAGACGTTCGATCGACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAAGCTTCAGAAATCAACAACTGGCTCAGCGCTGTTATGAACTACGAGCAAACCTGCATCGACGGGATTCCCGAAGGAAAGATGAGGGAAGACTTCACGAAGCTATTCGCCGAGTCAAGGGAGCTTGTGAGCAATGCCCTTGCCGTTATGTCGCAGTTTGCTTCGTTCTTTTCGATCTTCCAAGGAGCTGGGAACATTCACCTTCCATGGGAAACCAACGATAAAGATGCACCTGCCCCTGCTTCTGCTTCCGGTTCTTCTGCTTCTTTTGGTTCCGGTTCTTCTGCTTCTTCTGGTTCTGCTCCTGGTGTTGCCCCTGCAGGTTCTGCTCCTGCTCCTGGTTCCGCTCCTGGTGCGGCTCCGGTCCCAATGCCTTCCTTGGATGATCCACTTCCGACATTGCCTATCCCTGCTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAGATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGAAGCGGAGACTTCAAAACCATCTCTGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAGGAAAATGGTAAACCTAACCATGTACGGTGACGGAGGTGACAAGAGTATCATTACTGGGAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGAAAAGAGATGCAATTCAGAAACACTGCAGGAGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTCAACTGTGTCTTTGATGGTTACCAAGACACTCTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGGGACGCGTCAGCAGTGTTTCAAAACTGCACGATAATGGTGAAAAAGCCCCTTGAAAACCAGCAGAACATAGTGACTGCACAGGGGAGACTAGACAGGCAAGAAAACACTGGGTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGGACAGTGAGGAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATAGAAGACTTGATTCACCCAGATGGGTGGCTTCCATGGGAAGGGGACTTTGCACTCAAAACGCTGTACTATGGTGAGTTCAACAACAATGGAGTAGGTGCCAGCACCAGCGCTAGGGTGAATTGGCCTAACCGCAAAGTCATTGATAGGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGGCATGGATCAATGGTACAGGAGTCCCTGCTCAACTGGGCTTGTACTCTTAA	1923	0.5101	MAFQDFEQITERRRNENRLKLRKKILISVVSAVLLACVVGAATFVVVQRTGGSSTKTATPIQDASARPHVDQSSRLVEMICSSAEYKEKCKKTLGEALEKDPKLTEPKDLLKVSFILAENEMNKAFNETTKMEFASAQEKGAYSDCKEMFDDAKDELRRSIDEVGENDAKVLSTKASEINNWLSAVMNYEQTCIDGIPEGKMREDFTKLFAESRELVSNALAVMSQFASFFSIFQGAGNIHLPWETNDKDAPAPASASGSSASFGSGSSASSGSAPGVAPAGSAPAPGSAPGAAPVPMPSLDDPLPTLPIPAWAGPSEFKGSDEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTRKMVNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKEMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTIMVKKPLENQQNIVTAQGRLDRQENTGFVLQKCVIKAADDLVPLKGTVRNYLGRPWKEYSRTIIMETQIEDLIHPDGWLPWEGDFALKTLYYGEFNNNGVGASTSARVNWPNRKVIDRDEATRYTVEAFLQGAWINGTGVPAQLGLYS	640

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9803g00001	640	ProSitePatterns	Pectinesterase signature 2.	473	482	IPR033131	-
	Vium9803g00001	640	MobiDBLite	consensus disorder prediction	290	311	-	-
	Vium9803g00001	640	MobiDBLite	consensus disorder prediction	253	276	-	-
	Vium9803g00001	640	Pfam	Pectinesterase	329	624	IPR000070	GO:0030599\|GO:0042545
	Vium9803g00001	640	Pfam	Plant invertase/pectin methylesterase inhibitor	76	222	IPR006501	GO:0004857
	Vium9803g00001	640	NCBIfam	pectinesterase inhibitor domain	61	226	IPR006501	GO:0004857
	Vium9803g00001	640	MobiDBLite	consensus disorder prediction	245	337	-	-
	Vium9803g00001	640	FunFam	Pectinesterase	73	228	-	-
	Vium9803g00001	640	SUPERFAMILY	Pectin lyase-like	327	632	IPR011050	-
	Vium9803g00001	640	SMART	PMEI_2	72	223	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9803g00001	Vium-Chr9803	2490	4808	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9803g00001	1	639	Carbohydrate Esterase	AT4G33230	38.822	3.36e-162	476

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium9803g00001	-		-	gmx:100807628	918.302

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