Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9803g00001 ATGGCCTTCCAGGATTTCGAGCAAATCACTGAGCGCCGAAGAAACGAGAACAGACTCAAGCTCAGGAAGAAGATCTTAATCAGCGTTGTTTCCGCCGTTCTTCTTGCATGCGTGGTTGGCGCCGCCACATTCGTGGTTGTCCAGAGAACCGGTGGTTCCTCCACAAAAACCGCAACCCCAATACAAGACGCCTCCGCGAGGCCACACGTGGACCAAAGCTCCAGGCTGGTAGAAATGATCTGCAGCTCCGCGGAGTACAAAGAGAAATGCAAGAAAACCCTCGGTGAGGCTCTGGAGAAGGACCCGAAGCTGACGGAGCCCAAGGACCTGCTCAAGGTCTCCTTTATCCTTGCCGAGAACGAGATGAACAAAGCCTTCAACGAAACCACGAAAATGGAGTTCGCGTCGGCACAGGAGAAAGGCGCGTACAGTGATTGCAAGGAGATGTTCGATGACGCCAAGGATGAGCTGAGACGTTCGATCGACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAAGCTTCAGAAATCAACAACTGGCTCAGCGCTGTTATGAACTACGAGCAAACCTGCATCGACGGGATTCCCGAAGGAAAGATGAGGGAAGACTTCACGAAGCTATTCGCCGAGTCAAGGGAGCTTGTGAGCAATGCCCTTGCCGTTATGTCGCAGTTTGCTTCGTTCTTTTCGATCTTCCAAGGAGCTGGGAACATTCACCTTCCATGGGAAACCAACGATAAAGATGCACCTGCCCCTGCTTCTGCTTCCGGTTCTTCTGCTTCTTTTGGTTCCGGTTCTTCTGCTTCTTCTGGTTCTGCTCCTGGTGTTGCCCCTGCAGGTTCTGCTCCTGCTCCTGGTTCCGCTCCTGGTGCGGCTCCGGTCCCAATGCCTTCCTTGGATGATCCACTTCCGACATTGCCTATCCCTGCTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAGATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGAAGCGGAGACTTCAAAACCATCTCTGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTATGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAGGAAAATGGTAAACCTAACCATGTACGGTGACGGAGGTGACAAGAGTATCATTACTGGGAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGAAAAGAGATGCAATTCAGAAACACTGCAGGAGCAGAGAAGCATCAAGCAGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTCAACTGTGTCTTTGATGGTTACCAAGACACTCTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGGGACGCGTCAGCAGTGTTTCAAAACTGCACGATAATGGTGAAAAAGCCCCTTGAAAACCAGCAGAACATAGTGACTGCACAGGGGAGACTAGACAGGCAAGAAAACACTGGGTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGGACAGTGAGGAACTACCTCGGAAGGCCCTGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATAGAAGACTTGATTCACCCAGATGGGTGGCTTCCATGGGAAGGGGACTTTGCACTCAAAACGCTGTACTATGGTGAGTTCAACAACAATGGAGTAGGTGCCAGCACCAGCGCTAGGGTGAATTGGCCTAACCGCAAAGTCATTGATAGGGATGAGGCTACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGGCATGGATCAATGGTACAGGAGTCCCTGCTCAACTGGGCTTGTACTCTTAA 1923 0.5101 MAFQDFEQITERRRNENRLKLRKKILISVVSAVLLACVVGAATFVVVQRTGGSSTKTATPIQDASARPHVDQSSRLVEMICSSAEYKEKCKKTLGEALEKDPKLTEPKDLLKVSFILAENEMNKAFNETTKMEFASAQEKGAYSDCKEMFDDAKDELRRSIDEVGENDAKVLSTKASEINNWLSAVMNYEQTCIDGIPEGKMREDFTKLFAESRELVSNALAVMSQFASFFSIFQGAGNIHLPWETNDKDAPAPASASGSSASFGSGSSASSGSAPGVAPAGSAPAPGSAPGAAPVPMPSLDDPLPTLPIPAWAGPSEFKGSDEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTRKMVNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKEMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTIMVKKPLENQQNIVTAQGRLDRQENTGFVLQKCVIKAADDLVPLKGTVRNYLGRPWKEYSRTIIMETQIEDLIHPDGWLPWEGDFALKTLYYGEFNNNGVGASTSARVNWPNRKVIDRDEATRYTVEAFLQGAWINGTGVPAQLGLYS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9803g00001 640 ProSitePatterns Pectinesterase signature 2. 473 482 IPR033131 -
Vium9803g00001 640 MobiDBLite consensus disorder prediction 290 311 - -
Vium9803g00001 640 MobiDBLite consensus disorder prediction 253 276 - -
Vium9803g00001 640 Pfam Pectinesterase 329 624 IPR000070 GO:0030599|GO:0042545
Vium9803g00001 640 Pfam Plant invertase/pectin methylesterase inhibitor 76 222 IPR006501 GO:0004857
Vium9803g00001 640 NCBIfam pectinesterase inhibitor domain 61 226 IPR006501 GO:0004857
Vium9803g00001 640 MobiDBLite consensus disorder prediction 245 337 - -
Vium9803g00001 640 FunFam Pectinesterase 73 228 - -
Vium9803g00001 640 SUPERFAMILY Pectin lyase-like 327 632 IPR011050 -
Vium9803g00001 640 SMART PMEI_2 72 223 IPR006501 GO:0004857
Vium9803g00001 640 PANTHER PECTINESTERASE 33 628 - -
Vium9803g00001 640 CDD PMEI-like_3 80 229 - -
Vium9803g00001 640 FunFam Pectinesterase 323 638 - -
Vium9803g00001 640 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Vium9803g00001 640 Gene3D - 324 638 IPR012334 -
Vium9803g00001 640 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 227 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9803g00001 Vium-Chr9803 2490 4808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9803g00001 1 639 Carbohydrate Esterase AT4G33230 38.822 3.36e-162 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9803g00001 - - gmx:100807628 918.302