Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9795g00002 ATGAGTTTCTCTGACCACATTCCATCTTTTATGATGTCACCGCCGTCATTTTCGACAGACACAGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGAGGAGGAACATTCACAACAGGATCAACCCCCTTCGTTCAAGAGGGCAAGAATTGGTGATAACAATCACTCCTATCCAATGGCATGCCCTCCAAAGATGATTCAGAACCCCAATTTTAATAAGGGAACCAGCCACATTTTCTTCAAGACTCGCATGTGTGCAAAATTCAGAGTTGGGGCTTGTAGGAACGGTGATAATTGCAACTTTGCACATGGAGTTGAGGACATGAGGCAGCCACCCCCGAACTGGCAAGAGCTTGTTGGATTGCGCAATGAGGAGAGGCTACCCTCCGGGAATTGGGATGATGACCAGAAAATTATACAGAAGATGAAGCTGTGCAAGAAGTATTGTAATGGGGACGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAGTTCAGGGATGATTCGGGGAGGTACAGAGAGAGCACAGCTATAAACATCGGAACTAATGGATCTCCCAAGGCATATGGTGATCCTTCAAATTGTTTAGAGAATAATAAGGTTGTCAACACTGGCTTAAATGTTTCCCGCTCGAATGTTAAGTCCACTTATTGGAAAACTAAACTGTGCATCAAATTTGAGACAACAGGGCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGCTACAATTTCCTGGTGGACGCAATGAGGCAGAAACTGCAGGTGCCGTTCTAGTTTCAAATAAAGCTACCATTCCAACCTTACCAAGAGCTACACCAATTCTTTCTAATGATGCTCCTCCAAGCCAGAGAGCAAGTGTGCCTCCTGCAAATGAAGAGGAGCAGGGCAAGAAGCATTTACTGAAGTGGAAGGGACCCAAGAAAATCAACCGAATTTATGGTGATTGGCTTGACGATTTACCACTAGGTCACAACTTGCCAGGTAGAGTTGGAATCTGA 1035 0.4522 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNEEEHSQQDQPPSFKRARIGDNNHSYPMACPPKMIQNPNFNKGTSHIFFKTRMCAKFRVGACRNGDNCNFAHGVEDMRQPPPNWQELVGLRNEERLPSGNWDDDQKIIQKMKLCKKYCNGDECPYGDKCSFLHEDPAKFRDDSGRYRESTAINIGTNGSPKAYGDPSNCLENNKVVNTGLNVSRSNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQFPGGRNEAETAGAVLVSNKATIPTLPRATPILSNDAPPSQRASVPPANEEEQGKKHLLKWKGPKKINRIYGDWLDDLPLGHNLPGRVGI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9795g00002 344 Pfam CCCH-type zinc finger 145 166 IPR041367 -
Vium9795g00002 344 Pfam CCCH-type zinc finger 85 106 IPR041367 -
Vium9795g00002 344 MobiDBLite consensus disorder prediction 282 296 - -
Vium9795g00002 344 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Vium9795g00002 344 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Vium9795g00002 344 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Vium9795g00002 344 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Vium9795g00002 344 MobiDBLite consensus disorder prediction 34 55 - -
Vium9795g00002 344 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Vium9795g00002 344 FunFam Zinc finger CCCH domain-containing protein 76 112 - -
Vium9795g00002 344 SUPERFAMILY CCCH zinc finger 79 112 IPR036855 GO:0046872
Vium9795g00002 344 Gene3D - 141 170 - -
Vium9795g00002 344 Gene3D - 75 112 - -
Vium9795g00002 344 Gene3D - 217 256 - -
Vium9795g00002 344 MobiDBLite consensus disorder prediction 282 309 - -
Vium9795g00002 344 FunFam Zinc finger CCCH domain-containing protein 219 256 - -
Vium9795g00002 344 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Vium9795g00002 344 SUPERFAMILY CCCH zinc finger 223 255 IPR036855 GO:0046872
Vium9795g00002 344 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 173 IPR045877 GO:0003729
Vium9795g00002 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 251 IPR000571 GO:0046872
Vium9795g00002 344 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9795g00002 Vium-Chr9795 6921 9684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9795g00002 226 255 C3H Transcription Factor Family AT1G68200 60.000 6.24e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium9795g00002 zf-CCCH 9.1e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9795g00002 - - gmx:100793865 598.201