Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9794g00002 ATGGCTGACAAGGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACGTGCCACTCGAAGAGGTTTTTCAGACTCTGAGGTGTGATTCAAATGGACTCACAACAAAATCTGCTGAGGAGAGGTTGGCCATTTTTGGCCACAACAAACTTGAAGAGAAACAGGAGAGCAAGGTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTATGGCCAATGGAGGCGGCAAACCTCCTGATTGGCAAGACTTCGTTGGGATTATCACACTCCTTATTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCTGGTAATGCCGCAGCAGCTTTGATGGCTCGTCTAGCACCTAAAGCAAAGGTCCTTCGGGATGGGAAATGGATTGAAGAGGATGCCAGTGTTCTTGTTCCAGGGGATATAGTTAGTGTTAAGCTAGGTGATATTATCCCTGCGGATGCTCGTTTACTTGAAGGTGATCCGTTGAAGATTGATCAGTCCGCACTTACTGGTGAGTCTCTTCCTGTGACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCCACATGCAAGCAGGGAGAGATAAATGCAGTTGTTATAGCCACGGGAGTTCATACCTTCTTTGGCAAAGCTGCTCACCTTGTGGACTCCACAAATCAAGTTGGTCATTTTCAGAAGGTTCTGACTGCTATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAATAGAGATCATTGTCATGTACCCAATTCAACACCGACAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTCATTGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCAGTGACAATGGCTATTGGATCCCATCGCTTAGCTCAACAGGGTGCTATTACTAAAAGAATGACAGCCATAGAAGAGATGGCAGGAATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGTCAGTAGACAAGAATCTTATTGAGATTTTTACTAAAGGAGTTGATGTAGATACAGTTGTTCTCATGGCTGCTCGGGCTGCAAGATTGGAAAACCAAGATGCTATAGATGCTGCTGTTGTAGGGATGTTAGGTGATCCAAAAGAGGCAAGAGCTGGTGTTCAAGAGGTTCACTTCCTTCCCTTCAATCCAACTGACAAACGGACTGCCATGACTTATGTAGACAGTGAAGGTAAAATGCATCGCGTGAGCAAAGGTGCACCAGAACAGATTTTGAATCTTTCACACAATAAGTCAGAGATAGAACGCAGAGTTCATTCTGTCATCGATAAGTTTGCAGAGCGTGGCTTACGGTCTCTTGCAGTGGCTTACCAGGAAGTTCCTGATGGGATAAAAGAAAGCCAAGGAGGGCCTTGGCAATTTCTTGGACTCTTGCCTCTGTTTGACCCCCCTAGACATGATAGTGCTGAGACAATAAGAAGG 1509 0.442 MADKEEAMHAVLKEAVDLENVPLEEVFQTLRCDSNGLTTKSAEERLAIFGHNKLEEKQESKVLKFLGFMWNPLSWVMEAAAIMAIAMANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASVLVPGDIVSVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIIVMYPIQHRQYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFTKGVDVDTVVLMAARAARLENQDAIDAAVVGMLGDPKEARAGVQEVHFLPFNPTDKRTAMTYVDSEGKMHRVSKGAPEQILNLSHNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGIKESQGGPWQFLGLLPLFDPPRHDSAETIRR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9794g00002 503 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Vium9794g00002 503 Gene3D - 328 503 IPR023214 -
Vium9794g00002 503 Pfam E1-E2 ATPase 132 311 - -
Vium9794g00002 503 Pfam Cation transport ATPase (P-type) 381 435 - -
Vium9794g00002 503 Gene3D - 96 327 - -
Vium9794g00002 503 Gene3D - 343 490 IPR023299 GO:0000166
Vium9794g00002 503 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Vium9794g00002 503 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 326 IPR023298 -
Vium9794g00002 503 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Vium9794g00002 503 NCBIfam HAD-IC family P-type ATPase 103 350 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium9794g00002 503 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Vium9794g00002 503 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Vium9794g00002 503 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Vium9794g00002 503 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Vium9794g00002 503 FunFam Plasma membrane ATPase 134 218 - -
Vium9794g00002 503 FunFam Plasma membrane ATPase 343 490 - -
Vium9794g00002 503 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 503 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium9794g00002 503 PANTHER CALCIUM-TRANSPORTING ATPASE 19 503 - -
Vium9794g00002 503 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 337 496 IPR023299 GO:0000166
Vium9794g00002 503 Gene3D - 134 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9794g00002 Vium-Chr9794 25234 29127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9794g00002 1 503 Primary Pumps ATPases AT5G62670 88.668 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9794g00002 K01535 - gmx:100805218 926.006