Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9787g00001 ATGAATTATATTATCAGTATGTCAATTCTAAGTTTGGAGAGCCACTTGAGTATTCTGCATATCTTGATTTTCTCAGACACAAATAAGATTCCCCGCAAAATGAAAGTGACCAGACAGTACCGAGAATATATGGTTAATCTTTTGGAGTATCTCATATACTTTTTCCAGCGTACCGAGCCACTGCAAGATCTTGATCGAATTTTCTCGAAGGTTACAACTGAATTTGAAGAAAATTGGGCTGCTGGAAAGGTACGGGGATGGGAAAATGACAATCAGGAAAATGGACATGTACCTGCTGAGACCATTGATCTTGATTATTATAGTACTGTTGAAGAGCTGAAGAATGGTCCTGAAAGGTTTAAAGGAGGTAAAGCTCTGGCTGCATTAGGGCTTAAGACTGGCGTTACATTCAAACAACGGGCTGAGATGGTTTTTTATGCAGCACACACCTCTTGAAAAAGTTTGGAGAGGAAGCATTTTGCTAAGGGGACACGTAGTGTAGAAAAGAACAGGGTTGCTCCAGTTACAAAAGATGGAAATTCTAAAGAAATTGCATTGATGGAAGCTAAAATGGAAAAACTGTGTGATTTGTTAGAGGAGACAATTGCTCGAACAAAAGATAATGGTAAGAAACAGGCCCTAACATATGAAGAAATGGAAGCAGAACGTGAGGAGGTTAGTAACAAAGATGAACTTGAAAGCGAAGATGACGAGCAGCAGATAAATCCCCGTAAATTACCAATGGGGTGGGATGGAAAACCTATACCTTATTGGTTATATAAGCTACATGGTCTGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGTCTTGGTATACCGAATACCAAGAATTTCAACGAGATCACATCAATTGAGGAAGCAAAGGAACTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATCTATAATAAGAAAACATACACTGACTTACAGCGCCAGGGACTGATTTGA 1089 0.4022 MNYIISMSILSLESHLSILHILMXFSDTNKIPRKMKVTRQYREYMVNLLEYLIYFFQRTEPLQDLDRIFSKVTTEFEENWAAGKVRGWENDNQENGHVPAETIDLDYYSTVEELKKXGPERFKGGKALAALGLKTGVTFKQRAEMVFYAAHTSXKSLERKHFAKGTRSVEKNRVAPVTKDGNSKEIALMEAKMEKLCDLLEETIARTKDNVXKKQALTYEEMEAEREEVSNKDELESEDDEQQIXNPRKLPMGWDGKPIPYWLYKLHGLEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9787g00001 366 PANTHER SPLICING FACTOR SF3A-RELATED 38 356 - -
Vium9787g00001 366 ProSiteProfiles Zinc finger matrin-type profile. 271 302 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vium9787g00001 366 Coils Coil 190 211 - -
Vium9787g00001 366 Coils Coil 213 232 - -
Vium9787g00001 366 Pfam Replication stress response SDE2 C-terminal 84 164 IPR025086 -
Vium9787g00001 366 Pfam SF3a60/Prp9 C-terminal 249 366 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vium9787g00001 366 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9787g00001 Vium-Chr9787 886 6502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9787g00001 22 366 C2H2 Transcription Factor Family AT5G06160 68.966 1.50e-156 447