Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9778g00002 ATGGGGATTTGCTTTAGCATTGAAGACAAGAGCAACCTCTCCGTCTCCGATTCCAACGCTAAACCAAAGCCTCAAGGATCAGTAGGTCATGAATCTGCCGCTCCAATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGTTGGATACAGCAATGTGGATAGTTTCACGTACGAGGAACTGAGGCTTGCTACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATGGTGTGAGGTCGGGTTACAAGACCACTGAGGTCGCAATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGACAGGGAATGGCTCACCGAAGTTAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGTAAGTTTTGCATGAAATTTGCTAATGTATTTAAATTTCAAATTGGACTAAGGTTATTTATGTACTGGGATCAGCCTATTTTCTTAACTAATATGTTATCTGTAATTGGGTTTGTACCCAGGGGAGGAGGTTGTGTTTTGAATTTTCATGTTGTTGACGAAGGGTACATAATTATCTCTTTATCTAAAAGAGTAGCTCAATTATGTTAA 696 0.4138 MGICFSIEDKSNLSVSDSNAKPKPQGSVGHESAAPIVSINIKDLREGVGYSNVDSFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHGVRSGYKTTEVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRSKFCMKFANVFKFQIGLRLFMYWDQPIFLTNMLSVIGFVPRGGGCVLNFHVVDEGYIIISLSKRVAQLC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9778g00002 231 ProSiteProfiles Protein kinase domain profile. 68 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9778g00002 231 PANTHER OS01G0588500 PROTEIN-RELATED 28 183 - -
Vium9778g00002 231 ProSitePatterns Protein kinases ATP-binding region signature. 74 103 IPR017441 GO:0005524
Vium9778g00002 231 Pfam Protein tyrosine and serine/threonine kinase 74 176 IPR001245 GO:0004672|GO:0006468
Vium9778g00002 231 Gene3D Phosphorylase Kinase; domain 1 44 150 - -
Vium9778g00002 231 SUPERFAMILY Protein kinase-like (PK-like) 45 173 IPR011009 -
Vium9778g00002 231 SMART tyrkin_6 68 227 IPR020635 GO:0004713|GO:0006468
Vium9778g00002 231 FunFam Serine/threonine-protein kinase BIK1 37 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9778g00002 Vium-Chr9778 18572 20914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9778g00002 55 161 Glycoside Hydrolase AT3G07070 49.533 4.50e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium9778g00002 PK_Tyr_Ser-Thr 4.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9778g00002 - - vum:124848880 475.707