Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9755g00002 ATGGATGGTTCTTTTTCCTTTGATGGAGACTCCTTCTCAAGCCACCAGAGACGCTACTATCCAACACCGGCGAGTTATCACAGTGTGTCTGGCTCTGGCTCTTTCATACCATCCAGCTTTCACAGCGATGCTACTTCCACAACCAGAACAGCTCGCCGCAACCGAGTTCCTACCACACCCTTCGCTTCAGACGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACAGGGTGGCACCATTACAGCACAAACTATGGTTCTCTTCTGACTCCATGGGCAGCCAGCCCCCCTTCTGATCACAGCCGAATATTTCGACGATCAGCCAATGACTTCTACCTTTCAAGAACAAGTGGGTTCAGAGGTATCGCAAGCTCTTCTTATGAACATTCTGGCGGTGGTAGAGTTGAACTTAAGAGCTATGTTGCGAGGGACAATGATCATAGTTACTTTGATCATGGATTATCTACATCGGGGTTCATCCACCAGCAGAGTAGTAGAAAAAGTAAGAGTAGTCCATTGGCCGAAGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAAGAACGTGTAATTTTACCTAATGGCAATGATCATGGTCTTGAATCCCCATATCTTAAACACGGTCATGGTGATTATGGTGGGAGTTGCTATGTCGGTCACGGACTACCATCATATGATGGTAGCCATCTAAGTGGAAGTGGTGGGGGCTATACTTATCGCCACCATGACATTGAGAAGCATTCAGGATATGATGAAGAAGGTGAGGAAGACATGGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGATTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTGGGGGCCCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACTTGATCAACAAGATTTCAGAAGCAGACAAGGACAAAAAACAGATGATGAAGGATGTAGAAAAGATATGCCTGTTTATGGCGGGGCTAGCTGCTGTTGTGGTGGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGAGCGATCTGCACAGAGAATTAGAAGTGAGTATCTGAGAGCAGTTCTTAGACAGGACATAACTTTCTTTGATACAGATATCAACACAGGTGATATTATGCATGGAATTGCAAGTGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCACACTTCATTCATCATATATTTACATTCATATGTGGATACATAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTTGTGGTATTCTCAGTCACTCCATTGACAATGTTTTGTGGCATGGCTTACAAAGCACTTTATGGAGGCCTAACAGCAAAAGAGGAAGCTTCTTATAGGAAAGCTGGTAGCGTTGCGGAGCAAGCCATAAGCTCAATTAGGACAGTTTTTTCATTTGTTGCAGAAAGCCAATTAGCTGGAAAATATGATGAACTACTGCAGCAATCAGCTCCAATTGGGGCAAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCATTCTGGTATGGCTCTGTATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGGGGAAGAGGATTGGCACTGGCACTTTCATATTTTGCACAGTTTGCTCAAGGGACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGGTTGAGTTAAAAAGTGTAAGTTTTGCATATCCATCACGTCCTGATTCTCTGATACTTCATTCCCTTAGTTTGATAATACCACCTTCAAAAACTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGACCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGATCAGATTGGGATGGTTGGTCAGGAGCCAATCCTCTTTGCCACATCTATTCTGGAAAACGTGATGATGGGGAAAGATGATGCCACAAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGAACAAAACTCTCCGGAGGTCAGAAGCAGAGAATAGCATTGGCTCGAGCAATGATGAAAGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCGGTCCAACGGGCAATTGATAAGATTTCTGCCGGACGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACTATTGTGGTTCTTGAGCATGGTTCTGTCATTGAGATTGGTGACCATCGACAGCTTATGTCAAAAGCAGGAGCATACCACAACCTTGTCAAGCTTGCTACCGAAGCCATTCCAAAACCTCTAGCTATAGAGAATGGCATACAAAAAGCCAATGATCTATCCATCTATGATAAATCTGTTGCTGCTTTATCACGATCAAGATACGTGGCTGATATCCCTATGCCTATAGACTTAATATCTATGCATGGGGTGGAGAAACAGAAAGACATGGAAGATGATGTACAAGACACAAAGGCAAAACAATACAGCCTTTCTCAAGTATGGAAACTGCAAAAGCCAGAGCTCGTGATGCTATTTTCAGGACTTATTATGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGATTTTAGGCATATCCTTGGAAGTATATTTTGGCCATGACACTCATAAGATGAAAAGAGATGTTGCACACCTTTGTTTAACACTTGTTGGCCTTGGAATTGGTTGCATACTTTCCATGACAGGACAACAAGGTCTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGAGTTAGATACATCTTGTTTGAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCCCTCGACTGTGTTAGTTTTCGATCAGTACTCGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTCAATTGGAGACTAACGCTTGTGGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAACTTGATCATAAACGTTGGGCCGCGTGTGGACAACGACTCTTATGGCAAAGCCAGTAACATTGCTTCTGGTGCAGTGTCGAACATAAGGACAGTTACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTATCAGAACCTAGAAGAAAATCATTACGAAGATCACAACTTCAAGGTTTTATGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACACTTTGGTTTGGCGCATACCTTGTACAACATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTCTCTGTGGGACAACTAGCTGGCTTGGCACCAGATACTTCTACGGCGGCTACGGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGTAGACAGATCAAAGCCATTCAACATAGAATTCAAGATGGTGACTTTTACATACCCATCTAGGCCAGAAGTGACTGTGTTGAGGGACTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCCTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGGTTCTATGATCCTGACCAAGGAAAGGTGATGATGAGTGGGAAAGATTTGAGAGAGATCGATGTAAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGCATAAGGGAGAATATTGCATTTGGCGACCCAAATGCTTCATGGTCTGAAATTGAAGGGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTATGAGACGCAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAACGAATTGCTATAGCAAGAGCCATATTGAAGAGATCAAGGGTACTTTTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCCAAAGATGCAACAACCATAATAGTTGCTCACCGTCTTTCCACGATCAGAGAAGCTGATAAGATCGCAGTTATGAGAGACGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAAATCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACAGAAGCCAATGCCTTTTCTTGA 4521 0.4411 MDGSFSFDGDSFSSHQRRYYPTPASYHSVSGSGSFIPSSFHSDATSTTRTARRNRVPTTPFASDDDHSWQEEVSWKFEATGWHHYSTNYGSLLTPWAASPPSDHSRIFRRSANDFYLSRTSGFRGIASSSYEHSGGGRVELKSYVARDNDHSYFDHGLSTSGFIHQQSSRKSKSSPLAEEDELSMIDYSITEERVILPNGNDHGLESPYLKHGHGDYGGSCYVGHGLPSYDGSHLSGSGGGYTYRHHDIEKHSGYDEEGEEDMDEEDASPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLINKISEADKDKKQMMKDVEKICLFMAGLAAVVVVGAYLQITCWRLVGERSAQRIRSEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYIVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSVAEQAISSIRTVFSFVAESQLAGKYDELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYSPEGRKLSGVRGRVELKSVSFAYPSRPDSLILHSLSLIIPPSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDDATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMMKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVIEIGDHRQLMSKAGAYHNLVKLATEAIPKPLAIENGIQKANDLSIYDKSVAALSRSRYVADIPMPIDLISMHGVEKQKDMEDDVQDTKAKQYSLSQVWKLQKPELVMLFSGLIMGMFAGAILSLFPLILGISLEVYFGHDTHKMKRDVAHLCLTLVGLGIGCILSMTGQQGLCGWAGSKLTQRVRYILFESILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYINLIINVGPRVDNDSYGKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRRSQLQGFMFGLFQGSMYGAYTLTLWFGAYLVQHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSTAATAIPAVQDIIKRRPLIDNDRTKGRKVDRSKPFNIEFKMVTFTYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGKDLREIDVKWLRRQMALVGQEPALFAGSIRENIAFGDPNASWSEIEGAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHIQEALKNVAKDATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASNQNGLYASLVRAETEANAFS 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9755g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 940 1224 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9755g00002 1506 SUPERFAMILY ABC transporter transmembrane region 279 600 IPR036640 GO:0005524|GO:0016020
Vium9755g00002 1506 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1111 1251 - -
Vium9755g00002 1506 Gene3D - 613 873 IPR027417 -
Vium9755g00002 1506 Gene3D - 1258 1500 IPR027417 -
Vium9755g00002 1506 FunFam ABC transporter B family member 1 1249 1500 - -
Vium9755g00002 1506 SUPERFAMILY ABC transporter transmembrane region 926 1243 IPR036640 GO:0005524|GO:0016020
Vium9755g00002 1506 MobiDBLite consensus disorder prediction 41 64 - -
Vium9755g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 244 329 IPR036640 GO:0005524|GO:0016020
Vium9755g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 1110 1256 IPR036640 GO:0005524|GO:0016020
Vium9755g00002 1506 CDD ABC_MTABC3_MDL1_MDL2 615 852 - -
Vium9755g00002 1506 FunFam ABC transporter B family member 1 605 853 - -
Vium9755g00002 1506 CDD ABC_6TM_Pgp_ABCB1_D1_like 292 588 - -
Vium9755g00002 1506 ProSitePatterns ABC transporters family signature. 1399 1413 IPR017871 GO:0005524|GO:0016887
Vium9755g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1496 IPR003439 GO:0005524
Vium9755g00002 1506 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Vium9755g00002 1506 Pfam ABC transporter 633 782 IPR003439 GO:0005524
Vium9755g00002 1506 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 292 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9755g00002 1506 FunFam ABC transporter B family member 19 278 610 - -
Vium9755g00002 1506 PANTHER ABC TRANSPORTER B FAMILY 252 851 IPR039421 -
Vium9755g00002 1506 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 851 IPR003439 GO:0005524
Vium9755g00002 1506 CDD ABC_6TM_Pgp_ABCB1_D2_like 927 1242 - -
Vium9755g00002 1506 Gene3D ABC transporter type 1, transmembrane domain 338 1101 IPR036640 GO:0005524|GO:0016020
Vium9755g00002 1506 CDD ABC_MTABC3_MDL1_MDL2 1260 1498 - -
Vium9755g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 851 IPR027417 -
Vium9755g00002 1506 Pfam ABC transporter transmembrane region 291 562 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9755g00002 1506 Pfam ABC transporter transmembrane region 939 1208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium9755g00002 1506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1256 1497 IPR027417 -
Vium9755g00002 1506 MobiDBLite consensus disorder prediction 41 66 - -
Vium9755g00002 1506 SMART AAA_5 642 843 IPR003593 GO:0016887
Vium9755g00002 1506 SMART AAA_5 1287 1473 IPR003593 GO:0016887
Vium9755g00002 1506 Pfam ABC transporter 1279 1426 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9755g00002 Vium-Chr9755 4195 12035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9755g00002 968 1503 Calmodulin-binding Proteins AT2G36910 38.290 8.16e-108 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9755g00002 K05658 - gmx:100816700 2551.55