Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00049 ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTGGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTCAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAACATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCACACCTTAAAAAATCCCACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAGACCGAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATCCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCGAGTAACAGCTCTAGCTCGTCACAGTCACAGTCACAGTCACAATCACAATCACAATCTATGGAAGCGGTGGACCCAGCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA 669 0.4679 MNHRPFQDNMMFIPQLYPADAPYTQIIAQQGESKKPKRRRGKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSQSQSQSMEAVDPAFFGVFGVDGYDDDVFYGPETHCMNALEWINLYM 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00049 222 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Vium974g00049 222 CDD homeodomain 56 112 IPR001356 GO:0003677
Vium974g00049 222 MobiDBLite consensus disorder prediction 45 61 - -
Vium974g00049 222 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vium974g00049 222 MobiDBLite consensus disorder prediction 159 181 - -
Vium974g00049 222 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Vium974g00049 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 177 IPR045224 GO:0003700
Vium974g00049 222 MobiDBLite consensus disorder prediction 28 61 - -
Vium974g00049 222 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vium974g00049 222 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vium974g00049 222 Coils Coil 103 123 - -
Vium974g00049 222 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vium974g00049 222 MobiDBLite consensus disorder prediction 157 181 - -
Vium974g00049 222 Coils Coil 51 71 - -
Vium974g00049 222 Coils Coil 138 158 - -
Vium974g00049 222 Gene3D - 47 119 - -
Vium974g00049 222 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vium974g00049 222 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00049 Vium-Chr974 433726 435789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00049 1 222 Homeobox Transcription Factor Family AT4G36740 57.205 1.20e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium974g00049 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00049 K09338 - gmx:100809616 318.161