Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00047 ATGCACACAAGCAAAGATAAAAGGGCTACAGTAGTAACAACCAAAAGCCCCCTTCTTCAAGCTTCAACAATTCCTCTCCTCCATCATTCACATCACAGAGCACAACAAGGTCACACCGCAACACCTTCTGGTAGTCTTCACCAAGCGATGAGAGTTCCCGTTCCCTCATCCCCACAGGCTAACCCAAAACCAACTAATAACCTACTCCGTACCATTGCACTTCCCAACCTCAACACCACGGGCCTCTGCTACGAGCCCACCTCTGTCCTCGACCTCTGCCGTAGCCCAAGCCCGGGCTCCGAAAAGCCCACCGATCACTCAGTTGTCGTCACGGACTCCCAAGATTGTCTGGACCTGGACGACCATGCGTTGCACAACTTGGATTGGGACTCCATCATGAAGGACTTGGGCTTACACGACGACTCTGGTGCTCCCCTCTTAAAGACTATTCCCCACCCCGACAACAACAATAACAACCCATGCGACGACTTCACAATCGCACCCTTCGACCACGCCATTGAATTCTCCACTCTCTCCGACATCTACTCCAACCAAAACCTTACCTTCGATTTTAACCACCTAGTTCACGACTTCAGCAACCAACATCACAACAACGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCGGATTGCTTCGACACCAAGCAGTTACACGTCGCACAGGTGATATTGGAGCGGCTCAATCAACGGCTTCGATCCCCCGTGGGAAAACCTCTCCAACGCGCAGCCTTTTACTTCAAAGAAGCTCTCCAGTCTCTTCTCTCCGGTTCGAACCGGACGCCCAGGATTTCCTCGCTGGTGGAAATCGTGCATGGCATCAGAACCTTCAAGGCCTTCTCCGGAATCTCGCCGATTCCAATGTTCTCGATATTCACCACCAACCAGGTGGTTCTCGATCACGCTGCGTGCTCCTTCATGCACGTTATCGACTTCGACATCGGCCTTGGGATCCAATACGCTTCTCTCATGAAGGAGATAGCGGAGAAGGCCACGGAATCGCCGCTTCTCCGAATCACCGCCGTCGTTCCCGAAGAGTACGCCGTCGAGAGCACGCTGGTACGCGAAAACCTCGCGCAGTTCGCTCTCGAACTCAGGATTCGCGTCCAGGTCGACTTCGTGCCACTCCGAACCTTCGAGACGCTCTCCTTTAAGGCAGTGAAGCTCGTCGACGGCGAGAGCACCACCGTGCTCCTTTCCCCAGTGATTTTCCGCCACCTCGGAAATGCTGCCGCGTTCTTGGCGGACTTGCGGCTGGTCTCTCCCAGCGTGGTGGTTTTGGTGGATAGCGAGGGATGGGCGGATATGGCCACAGCAGCAGCCTCGTCGTTCCGACGCGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGTTGGAGTCGCTGGATGTGTCGACGGCTGGGGGAGGAGGGGAATGGGTGAGAAGAATCGAGATGATACATCTGCGACCGAAGATTTTGGCGGCGGTGGAGAGTTCATGGGGGCGGATGCCACCGTGGAGGGAGACCTTTTACAGCGCCGGAATGCGGCCGGTTCATTTGAGCCAGTTTGTGGATTTCCAAGCAGAGTGCTTGTTGGCCAAGTCGCAAATCAGAGGCTTCCACGTGGAAAAACGTCAGAACGAACTTATACTGTTCTGGCATGACAGAGCCATGGTTTCCTCGTCAGCTTGGCGGTTTTAG 1704 0.5458 MHTSKDKRATVVTTKSPLLQASTIPLLHHSHHRAQQGHTATPSGSLHQAMRVPVPSSPQANPKPTNNLLRTIALPNLNTTGLCYEPTSVLDLCRSPSPGSEKPTDHSVVVTDSQDCLDLDDHALHNLDWDSIMKDLGLHDDSGAPLLKTIPHPDNNNNNPCDDFTIAPFDHAIEFSTLSDIYSNQNLTFDFNHLVHDFSNQHHNNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALQSLLSGSNRTPRISSLVEIVHGIRTFKAFSGISPIPMFSIFTTNQVVLDHAACSFMHVIDFDIGLGIQYASLMKEIAEKATESPLLRITAVVPEEYAVESTLVRENLAQFALELRIRVQVDFVPLRTFETLSFKAVKLVDGESTTVLLSPVIFRHLGNAAAFLADLRLVSPSVVVLVDSEGWADMATAAASSFRRGVVSSLEYYSMMLESLDVSTAGGGGEWVRRIEMIHLRPKILAAVESSWGRMPPWRETFYSAGMRPVHLSQFVDFQAECLLAKSQIRGFHVEKRQNELILFWHDRAMVSSSAWRF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00047 567 ProSiteProfiles GRAS family profile. 200 566 IPR005202 -
Vium974g00047 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 195 560 IPR005202 -
Vium974g00047 567 Pfam GRAS domain family 210 566 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00047 Vium-Chr974 402849 404998 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00047 117 567 GRAS Transcription Factor Family AT4G36710 54.430 1.92e-166 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium974g00047 GRAS 4.2e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00047 - - gmx:100807470 865.914