Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00037 ATGCCGGTTGACTTGGACAATGTTTCCACGGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCGACGACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCCTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGCTGCAAAGGCTAGTTCCGAGTCGGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCCGCAGCTGCGGCTGCGGCTACGCCTCCACCGCCTTCTGCACCGCCAGCTAGTTCTAAGTCAAACAGTGTTGTCGTATCGTCGTCTGTTTTGCAGACACCAAATCCAGAGTTGCCGGAAAATTCCCCACAAGTCATAGAAGAACCGCAGGCCAATCCTGCTGTGAGTGGAAGCTGTAGCGGCACCAGTACCAGTACCAGCACAACTAGCTCAACAAGCAACAGCAATGGTGCTGCTAGCAGCAGTGTCTTTGCAAGCCTGTTTGCTTCATCAACAGCATCCGCAACTGCGAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCACGGCCTTCATCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTGCAAAAAGCCGCCCAAATGGGTGCAGCTGCTACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCTTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTACAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCTGTGACGGCAGCTCTGGACTAAAGGAGTTGATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCCGCTGGGGGCAACCCCGGTGGAGGCTTATCGGCACTCATCACTTCAATTGGTGGCAGTCTGGATGTTACTGCTGCAGCAGCAGCAGCATCCTTTGGTAATGGAGAATTCCCTGGCAAGGATATTGGGAGGAGTACTTGA 1569 0.5373 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTAAKASSESDSKAVTGDSSPPAAAAAATPPPPSAPPASSKSNSVVVSSSVLQTPNPELPENSPQVIEEPQANPAVSGSCSGTSTSTSTTSSTSNSNGAASSSVFASLFASSTASATASLQSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAASFGNGEFPGKDIGRST 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00037 522 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Vium974g00037 522 FunFam protein indeterminate-domain 12-like 40 108 - -
Vium974g00037 522 MobiDBLite consensus disorder prediction 9 30 - -
Vium974g00037 522 Gene3D Classic Zinc Finger 115 195 - -
Vium974g00037 522 Gene3D Classic Zinc Finger 41 107 - -
Vium974g00037 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 481 IPR031140 -
Vium974g00037 522 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Vium974g00037 522 SMART c2h2final6 102 132 IPR013087 -
Vium974g00037 522 SMART c2h2final6 61 83 IPR013087 -
Vium974g00037 522 SMART c2h2final6 137 157 IPR013087 -
Vium974g00037 522 MobiDBLite consensus disorder prediction 413 439 - -
Vium974g00037 522 MobiDBLite consensus disorder prediction 413 427 - -
Vium974g00037 522 MobiDBLite consensus disorder prediction 191 295 - -
Vium974g00037 522 MobiDBLite consensus disorder prediction 1 43 - -
Vium974g00037 522 MobiDBLite consensus disorder prediction 192 214 - -
Vium974g00037 522 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Vium974g00037 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Vium974g00037 522 MobiDBLite consensus disorder prediction 236 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00037 Vium-Chr974 362384 366087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00037 1 522 IDZ Gene Family AT5G66730 60.037 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium974g00037 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00037 K25869 - gmx:100806404 791.956