Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00024 ATGTCTTCCTCTCCTCACAACAGTTCTCCAGATAATGAAATACCTGATGATTCCACCCCAGACAACAGCACCCCGGACAACAGCACCCCTGATGACGCTGACAACTCATCTTCAACACCATCAAATTCATCACCGCCACCATCTCCACCGCCACCTTCATCGCCACCTCCATCTCCTCCACAATCATCTTCATCTCCACCTCCGCCAACCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACATCAACCAATCCAAGCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCCACCCGCTTCATCACACTCTCCTCCCTCTTTTAAATCACCCACTCCTCCACACAAATCATTGCAACCTCCAACCGCTTCAAAAAATAGTGGCAGTGGCAGTAGCGGTAGTGGTAAACATGGAAACAGCGATAGCAGTGATCGTGGCAGACACGATAACAGTAAAGCAATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTTCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTACGGAGAGCAATCATTCGGAAAAGGGAATAACAACTATTACAATAGTGGGCAACACCAGGGTTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGGTGCAAAACGGAATGGTTCCCGGTGGTGGTGGTGGGGGTGGGGGTGGAGGTGGTGGTGGAGGTGGGTGGGGTGCACCACCTCCTCCTATGATGCATAGCGCTGATATGAGCTCCAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACTTATGAGGAACTATCTGCTGCCACCAATGGATTCGCTGATTCAAAACTGATAGGACAGGGTGGCTTCGGTTATGTCCACATGGGTGTGTTGCCTAACGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATCAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGCGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAAAACCTTGGAATATCACCTTCATGGTAACTACTACATATATGCATTCTTTCAATCTATGTCACTTTAG 1188 0.4949 MSSSPHNSSPDNEIPDDSTPDNSTPDNSTPDDADNSSSTPSNSSPPPSPPPPSSPPPSPPQSSSSPPPPTPSEKSSPSPPTSTNPSPPSPNTSPQTPSPPASSHSPPSFKSPTPPHKSLQPPTASKNSGSGSSGSGKHGNSDSSDRGRHDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSFGKGNNNYYNSGQHQGYYGGPHGDHVVRVQNGMVPGGGGGGGGGGGGGGGWGAPPPPMMHSADMSSNYSTGPPPLPPPSPTLALGLKGGTFTYEELSAATNGFADSKLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNKTLEYHLHGNYYIYAFFQSMSL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00024 395 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 161 383 IPR047117 -
Vium974g00024 395 FunFam proline-rich receptor-like protein kinase PERK1 273 370 - -
Vium974g00024 395 MobiDBLite consensus disorder prediction 120 140 - -
Vium974g00024 395 Gene3D Phosphorylase Kinase; domain 1 274 370 - -
Vium974g00024 395 MobiDBLite consensus disorder prediction 228 268 - -
Vium974g00024 395 MobiDBLite consensus disorder prediction 1 41 - -
Vium974g00024 395 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vium974g00024 395 MobiDBLite consensus disorder prediction 1 149 - -
Vium974g00024 395 MobiDBLite consensus disorder prediction 42 119 - -
Vium974g00024 395 ProSiteProfiles Protein kinase domain profile. 295 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium974g00024 395 PRINTS Proline rich extensin signature 40 61 - -
Vium974g00024 395 PRINTS Proline rich extensin signature 64 80 - -
Vium974g00024 395 PRINTS Proline rich extensin signature 18 30 - -
Vium974g00024 395 PRINTS Proline rich extensin signature 84 101 - -
Vium974g00024 395 Pfam Protein tyrosine and serine/threonine kinase 299 383 IPR001245 GO:0004672|GO:0006468
Vium974g00024 395 SUPERFAMILY Protein kinase-like (PK-like) 264 386 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00024 Vium-Chr974 245210 247323 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00024 234 383 Trihelix Transcription Factor Family AT4G32710 55.333 2.61e-46 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium974g00024 PK_Tyr_Ser-Thr 1.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00024 - - vum:124824383 481.1