Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00021 ATGTCTTCCTCTCCTCACAACAGTTCTCCAGATAATGAAATACCTGATGATTCCACCCCAGACAACAGCACCCCGGACAACAGCACCCCTGATGACGCTGACAACTCATCTTCAACACCATCAAATTCATCACCGCCACCATCTCCACCGCCACCTTCATCGCCACCTCCATCTCCTCCACAATCATCTTCATCTCCACCTCCGCCAACCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACATCAACCAATCCAAGCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCCACCCGCTTCATCACACTCTCCTCCCTCTTTTAAATCACCCACTCCTCCACACAAATCATTGCAACCTCCAACCGCTTCAAAAAATAGTGGCAGTGGCAGTAGCGGTAGTGGTAAACATGGAAACAGCGATAGCAGTGATCGTGGCAGACACGATAACAGTAAAGCAATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTTCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTACGGAGAGCAATCATTCGGGAAAGGGAATAACAACTATTACAATAGTGGGCAACACCAGGGTTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGGTGCAAAACGGAATGGTTCCCGGTGGTGGTGGTGGGGGTGGGGGTGGAGGTGGTGGTGGAGGTGGGTGGGGTGCACCACCTCCTCCTATGATGCATAGCGCTGATATGAGCTCCAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACTTATGAGGAACTATCTGCTGCCACCAATGGATTCGCTGATTCAAAACTGATAGGACAGGGTGGCTTCGGTTATGTCCACATGGGTGTGTTGCCTAACGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATCAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGCGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAAAACCTTGGAATATCACCTTCATGGAAAGGGAAGGCCTACAATGGATTGGCCTACCAGAATGCGAATTGCGATAGGATCAGCCAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCGAATGTCCTCATTGATGATAGCTTCGAGGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACCACCGATAATAATACTCATGTATCGACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAGCTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTACTGAATCGTGGATTGGAAGAGGATGGCAACTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAAATGGCTAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGGCATTCTTCCAAGAAACGTGCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTGTCGCTGGATGATTTGAAAGATGGGATGAAGACAGGGCAGAGTACTGTTTTCAATTCTTCATCTGGGTCAGATCAGTATGATACAATGCAGTACAATGCAGACATGGAAAAGTTTAGAAAGGCAGTGTTTTCTAGCCAGGAATTTGGCACGAGCAGTGGTGGCTCTAGTAGTGAAGTGAGCCAGAAACAGAGGCTTTAG 1914 0.4822 MSSSPHNSSPDNEIPDDSTPDNSTPDNSTPDDADNSSSTPSNSSPPPSPPPPSSPPPSPPQSSSSPPPPTPSEKSSPSPPTSTNPSPPSPNTSPQTPSPPASSHSPPSFKSPTPPHKSLQPPTASKNSGSGSSGSGKHGNSDSSDRGRHDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSFGKGNNNYYNSGQHQGYYGGPHGDHVVRVQNGMVPGGGGGGGGGGGGGGGWGAPPPPMMHSADMSSNYSTGPPPLPPPSPTLALGLKGGTFTYEELSAATNGFADSKLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNKTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLNRGLEEDGNFGELVDPFLEGNYNPQEMARMAACAAASIRHSSKKRAKMSQIVRILEGDVSLDDLKDGMKTGQSTVFNSSSGSDQYDTMQYNADMEKFRKAVFSSQEFGTSSGGSSSEVSQKQRL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00021 637 PRINTS Proline rich extensin signature 64 80 - -
Vium974g00021 637 PRINTS Proline rich extensin signature 18 30 - -
Vium974g00021 637 PRINTS Proline rich extensin signature 84 101 - -
Vium974g00021 637 PRINTS Proline rich extensin signature 40 61 - -
Vium974g00021 637 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vium974g00021 637 SMART serkin_6 295 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium974g00021 637 MobiDBLite consensus disorder prediction 228 268 - -
Vium974g00021 637 FunFam proline-rich receptor-like protein kinase PERK1 273 370 - -
Vium974g00021 637 MobiDBLite consensus disorder prediction 1 41 - -
Vium974g00021 637 ProSiteProfiles Protein kinase domain profile. 295 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium974g00021 637 MobiDBLite consensus disorder prediction 1 149 - -
Vium974g00021 637 SUPERFAMILY Protein kinase-like (PK-like) 274 568 IPR011009 -
Vium974g00021 637 Gene3D Transferase(Phosphotransferase) domain 1 371 585 - -
Vium974g00021 637 MobiDBLite consensus disorder prediction 120 140 - -
Vium974g00021 637 Gene3D Phosphorylase Kinase; domain 1 275 370 - -
Vium974g00021 637 MobiDBLite consensus disorder prediction 42 119 - -
Vium974g00021 637 FunFam Proline-rich receptor-like protein kinase PERK1 371 579 - -
Vium974g00021 637 Pfam Protein tyrosine and serine/threonine kinase 299 500 IPR001245 GO:0004672|GO:0006468
Vium974g00021 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 161 614 IPR047117 -
Vium974g00021 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00021 Vium-Chr974 234480 242156 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00021 153 634 Trihelix Transcription Factor Family AT1G70460 49.696 2.67e-149 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium974g00021 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00021 - - gmx:100777163 793.112