Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00019 ATGGGGGACTTCAACAGCAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCTTTGGAGTACAAACCGCCGCCCGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGAGCAAATTTGCTGAGACTGGGGATCCAGAATACGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCTCATAATGATCCAAATGTGTCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTAGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTACAAACAAGCTGATGGTAGGAAAATCGATGGTAGAAGGGTGCTCGTTGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAACGGCATTCTGGGAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGCGCGAGAGGACCGGCATGGTGATAGGGACAGGGAAGTATCACGTGAAAAAGGTAGGGATAGAGATCGGGAGCGATCTCGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACACCACAGAGACAGAGACAGGACAAGAGACAGGGATAGGGAAAGAGACAGAGATCGTGGACGTGATCGAGATAGGGCACGGGATCGCGATAGGGATAGGGACCGTGATCGACACCGTGAAAGGGATAGAGACTATGATGTCGGGGACACAGATCGACGTTCACGTGATAGGGAGTCTGAATATGATCGTGTGGAATCTAAACATGAGAGGGACCAACATGGAGAAAGGAACCGTGAGTATGAGCCTGAGGATGAGCGTGGTAGGCATAGCCAGTACGAGCATGGACGTCGACATGCAGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATGGAGATGACCGTGGTGATCATTACAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGTAGGGCGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCACAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1428 0.4895 MGDFNSNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAETGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKRELESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRAREDRHGDRDREVSREKGRDRDRERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYDVGDTDRRSRDRESEYDRVESKHERDQHGERNREYEPEDERGRHSQYEHGRRHADPDHDPEQYDHYHGDDRGDHYNQYHDHDRMEDDYHVGRATSESHEKEKSHGTDREYRRTERSHSREYDY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00019 475 SMART rrm1_1 144 217 IPR000504 GO:0003723
Vium974g00019 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Vium974g00019 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Vium974g00019 475 MobiDBLite consensus disorder prediction 246 475 - -
Vium974g00019 475 FunFam U1 small nuclear ribonucleoprotein 70 kDa 130 255 - -
Vium974g00019 475 Gene3D - 130 255 IPR012677 -
Vium974g00019 475 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 46 134 IPR022023 -
Vium974g00019 475 MobiDBLite consensus disorder prediction 225 475 - -
Vium974g00019 475 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 64 294 - -
Vium974g00019 475 CDD RRM_snRNP70 142 232 IPR034143 GO:0030619
Vium974g00019 475 SUPERFAMILY RNA-binding domain, RBD 131 243 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00019 Vium-Chr974 220299 226249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00019 145 191 C2H2 Transcription Factor Family AT2G19380 40.426 1.36e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00019 K11093 - gmx:100800903 661.759