Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00017 ATGGAGACGAAGGACAAAATGAATAATGAAGAACTTGCTGTGGAGTCTCCAACTTCGGTTCTCGAAGATGAGGATGTTTGTGCCCCCAAAGATGAAGTTCAGTTGGAGGAAGAGTTAATTGCTGATGTCATAGACGATGGGTCGTCTCTTGTATCGAAAACTATGGCGGAGGAGGAAGCGAAGTTACTTAATGCTAGGATAAAGGAAGAGGAGGTTCAGTGCGAGGAGGCACCTGACCTCAACGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAGCTGTACTCCGAATTTTTGCTGGAGAAAATGGATGACATCACACTTAATGTGGGTGAACAAGTGAAAATGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAGGGGTAGGGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGAAAATTGAAGCCTTATCAACTAAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACTATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTTTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTTCCTACAATTATCTACCATGGTGACAAGAAGGAGAGAAATGAGATCCGAAGGAAATACATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTCTTAACTTCTTACGAGGTTGCATTAAATGATGCCAAGAAATATTTGAGGCCATACAGTTGGAAATATCTCGTTATTGATGAGGGACACAGGCTCAAAAATTCACAATGCAAATTAGTAAAGGCATTGAAATACTTAACTGTTGAAAACAAGCTTCTTCTAACTGGAACTCCACTTCAGAACAACTTGGCCGAACTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTCGAGTCATGGTTTAATTTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTAGAAGAGAAACGAAGATCCCAAATAGTAGCAAAGCTCCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTGGAGATTATGTTGCCAAAGAAAAAAGAGATTATTATCTATGCAAACATGACCGACTATCAGAAGAATTTGCGGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAAAAGAAAAAATGTCAAGCGGACGCCCTTTTCCTGCAAGTGCGCTTCGTAATTTGGCTATTCAGCTTAGGAAAGTGTGTAACCATCCCGATCTTATAGATCCAGACTGTGATCATACATATTTATATCCTCCTGTAAATGAAATAGTTGAACAGTGTGGAAAATTCCATTTGCTCGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGACTAAAGTGTTAGATATAATAGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGATAGGAAACGACAGATCCAGGACTTCAACGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTTACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGGTGGATTTGCAGGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATATCTACCGGCTGTCAACTGCTCAATCCATAGAGGATCGCATGTTGAAAAGGGCTTTCAGCAAATTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAGCGTAAAGCTGTCAATACTGATCAGATAGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGATGAAACAGATGAAGATAAAATGATACGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCATGGATCGCAGTGATCTTATCGTCAACAACTCAGACGAACCTCCATGCAGTTCCTTTCCTCTTAAAGGTCCAGGGTGGGAGGTGGTGATTCCAACTGCGACTGGAGGTGTACTCTCTACTCTCAACAGCTAG 2271 0.4139 METKDKMNNEELAVESPTSVLEDEDVCAPKDEVQLEEELIADVIDDGSSLVSKTMAEEEAKLLNARIKEEEVQCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLNVGEQVKMEEQESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPTIIYHGDKKERNEIRRKYMPRTIGPKFPIVLTSYEVALNDAKKYLRPYSWKYLVIDEGHRLKNSQCKLVKALKYLTVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQIVAKLHAILRPFLLRRMKSDVEIMLPKKKEIIIYANMTDYQKNLRDHLVNKTLGNYLKEKMSSGRPFPASALRNLAIQLRKVCNHPDLIDPDCDHTYLYPPVNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIIDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHIYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERKAVNTDQIEEEDVLALLRDDETDEDKMIRTDISDEDLEKLMDRSDLIVNNSDEPPCSSFPLKGPGWEVVIPTATGGVLSTLNS 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00017 756 Gene3D - 427 726 IPR027417 -
Vium974g00017 756 CDD SF2_C_SNF 505 639 - -
Vium974g00017 756 SMART helicmild6 545 629 IPR001650 -
Vium974g00017 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 421 IPR027417 -
Vium974g00017 756 PANTHER SNF2/RAD54 HELICASE FAMILY 52 696 - -
Vium974g00017 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 519 687 IPR001650 -
Vium974g00017 756 MobiDBLite consensus disorder prediction 117 143 - -
Vium974g00017 756 SMART ultradead3 187 382 IPR014001 -
Vium974g00017 756 MobiDBLite consensus disorder prediction 1 24 - -
Vium974g00017 756 Pfam Helicase conserved C-terminal domain 522 629 IPR001650 -
Vium974g00017 756 FunFam Chromatin complex subunit A 106 431 660 - -
Vium974g00017 756 Gene3D - 159 420 IPR038718 -
Vium974g00017 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 714 IPR027417 -
Vium974g00017 756 Coils Coil 53 75 - -
Vium974g00017 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 371 IPR014001 -
Vium974g00017 756 Pfam SNF2-related domain 194 494 IPR000330 GO:0005524|GO:0140658
Vium974g00017 756 FunFam ATP-dependent DNA helicase DDM1 185 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00017 Vium-Chr974 204504 210778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00017 177 678 RAD5 or RAD16-like Gene Family AT3G16600 23.974 7.94e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium974g00017 SNF2_N 3.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium974g00017 K19001 - gmx:100777687 1290.79